PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96662

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 967aa MW: 108980 Da PI: 6.6212

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96662	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	5.1e-27	193	278	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY++YAk +GFsvrk k ++s ng+i kr+f Cskeg+r +++++ + r +r+etrtgC a++++++e +gkw++++++leHnH+l OMO96662 193 KFYKDYAKAIGFSVRKGKYQRS-SNGSIRKRNFLCSKEGFRLSKQNS-NAVRYRRKETRTGCGAMVQITNE-NGKWMISRFVLEHNHNL 278 6**************99998.8999************9999.99999*************9.*************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence
MGDELDSTSG TGFSLGYELS LDNYYLDGFC LSNLREDQDD HVPYPLLSPG ANNPNNNHPM 60 CFDREYSNTA GGGVHGSSDD GWSAVSGALS FTTTYGPDLD EQQLTVTPPG VAEVAVTQQQ 120 QYSQKMDNST KHHMSCGTHP SSLDSDSYDT ASSDSNGEAE VQQQSKTKTK GTEVTFRAPE 180 LDMEFSSEEE AYKFYKDYAK AIGFSVRKGK YQRSSNGSIR KRNFLCSKEG FRLSKQNSNA 240 VRYRRKETRT GCGAMVQITN ENGKWMISRF VLEHNHNLEG SSQRYIDSCT RNSRVSEDPL 300 TMHTVGKAGI ASKTGDVICE NFGNVDYSGY LHHENLCSLN PEDGQGLINY LKQLQLEDRS 360 FFYTLQVDAK CSLTNIFWRD GRSKMDYYYF GDVIVVDTSF RVGVQNMICA PILGLNHHRQ 420 FVLLGCALLL DESKDSFMWL FGTFMAAMDG HQPKTILTNE NQAMADAIKE ILPVTQHNIG 480 MWYIQHTAAE HLSELYPQSK FQTLFNKCIF DCKSEEEFDL FWGSLVEQYN LHENEWLKTL 540 HMMRKKWSPI FIESTTFSAG LQSTDDCKEI TTVFQKLMAE NMTPLEFAHK YQQVAKEQRS 600 YELDEDLYCN ETTPLMILKG SALEKQAADV YTCTMFKLFQ EELRGCLSVA IEDIGSNGGV 660 AAFKLKEEGE KDRIVKLCDS SNQIACSCKK YECVGILCVH ILKVLNAKNV FQLPSQYILK 720 RWTKSAKHEK GTNDNIGVAD RSQKSLKVRK LMQKALTVIT KSVAVEEGYK IVEDCLDKVL 780 GKVENLLKRK LTQHQEIGKD VEIVCTGNGG MMETQTVVSA PPFQNEAAEH RMRNKSKRKH 840 EDDVSEISCK SMDDGVLHRQ LPKQATKGEE NNKGSRAISS HSYFVGDCSR QPACISPRPP 900 LPSPPTIHQL KGLSKPMGNL QERKKQAPDA PVSRREMETM EMTIMAKMKE MQEGILRAIN 960 ENKNKAK

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence

MGDELDSTSG TGFSLGYELS LDNYYLDGFC LSNLREDQDD HVPYPLLSPG ANNPNNNHPM  60
CFDREYSNTA GGGVHGSSDD GWSAVSGALS FTTTYGPDLD EQQLTVTPPG VAEVAVTQQQ  120
QYSQKMDNST KHHMSCGTHP SSLDSDSYDT ASSDSNGEAE VQQQSKTKTK GTEVTFRAPE  180
LDMEFSSEEE AYKFYKDYAK AIGFSVRKGK YQRSSNGSIR KRNFLCSKEG FRLSKQNSNA  240
VRYRRKETRT GCGAMVQITN ENGKWMISRF VLEHNHNLEG SSQRYIDSCT RNSRVSEDPL  300
TMHTVGKAGI ASKTGDVICE NFGNVDYSGY LHHENLCSLN PEDGQGLINY LKQLQLEDRS  360
FFYTLQVDAK CSLTNIFWRD GRSKMDYYYF GDVIVVDTSF RVGVQNMICA PILGLNHHRQ  420
FVLLGCALLL DESKDSFMWL FGTFMAAMDG HQPKTILTNE NQAMADAIKE ILPVTQHNIG  480
MWYIQHTAAE HLSELYPQSK FQTLFNKCIF DCKSEEEFDL FWGSLVEQYN LHENEWLKTL  540
HMMRKKWSPI FIESTTFSAG LQSTDDCKEI TTVFQKLMAE NMTPLEFAHK YQQVAKEQRS  600
YELDEDLYCN ETTPLMILKG SALEKQAADV YTCTMFKLFQ EELRGCLSVA IEDIGSNGGV  660
AAFKLKEEGE KDRIVKLCDS SNQIACSCKK YECVGILCVH ILKVLNAKNV FQLPSQYILK  720
RWTKSAKHEK GTNDNIGVAD RSQKSLKVRK LMQKALTVIT KSVAVEEGYK IVEDCLDKVL  780
GKVENLLKRK LTQHQEIGKD VEIVCTGNGG MMETQTVVSA PPFQNEAAEH RMRNKSKRKH  840
EDDVSEISCK SMDDGVLHRQ LPKQATKGEE NNKGSRAISS HSYFVGDCSR QPACISPRPP  900
LPSPPTIHQL KGLSKPMGNL QERKKQAPDA PVSRREMETM EMTIMAKMKE MQEGILRAIN  960
ENKNKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-99	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO96662