PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96611

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HSF

Protein Properties

Length: 584aa MW: 65855.2 Da PI: 5.998

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96611	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.5	5.7e-35	20	110	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++i+ OMO96611 20 FLLKTYDMVDDSSTDEIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLLKNIH 107 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k OMO96611 108 RRK 110 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MDPTAASSGG GGGGGGPAPF LLKTYDMVDD SSTDEIVSWS SNKKSFVVWN PPEFARLLLP 60 TYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEDFVKDQK HLLKNIHRRK PIHSHSHPQG 120 SLIDPERAGF EEEIEKLSRE KATLEANVLR FRQERSAAKH LFEELTQQAD QMERRQEILC 180 NFLQKAVNDP TFVEHLVRKI ESMDVAAYNK KRRLPQVDQI KPVGENSLLD NNGSSRPEFG 240 NIFHQDFSNK LRLELSPAVS DINLVSNSTQ SSSEDGASPQ RRISEGEPKD VQPRPDGLLF 300 APEALDLSDT GTSFTFKMDS SFNQRVSIND SPTVHSMQQR LSSNEETDSH ISCQLNLSLA 360 SSSLQVNRSP SLTRMSQLGQ EIGKVSDSRS YANNKDSDTR RFENSKNMVD EEAALSSPKE 420 GPNTNQAPAA PPVRVNDVFW EQFLTERPGS SDNEEASSSY RANPYEEQED KRCKATQCNS 480 SIGVSILELG HALKASEVDV MVRRVCSKKL EDCLKEQEME SESSRRVLVM QRRYISYETL 540 RRDMVPCAKP GASYYDCNAG QANPYNRGCE VITRCARDIK DNKS

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MDPTAASSGG GGGGGGPAPF LLKTYDMVDD SSTDEIVSWS SNKKSFVVWN PPEFARLLLP  60
TYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEDFVKDQK HLLKNIHRRK PIHSHSHPQG  120
SLIDPERAGF EEEIEKLSRE KATLEANVLR FRQERSAAKH LFEELTQQAD QMERRQEILC  180
NFLQKAVNDP TFVEHLVRKI ESMDVAAYNK KRRLPQVDQI KPVGENSLLD NNGSSRPEFG  240
NIFHQDFSNK LRLELSPAVS DINLVSNSTQ SSSEDGASPQ RRISEGEPKD VQPRPDGLLF  300
APEALDLSDT GTSFTFKMDS SFNQRVSIND SPTVHSMQQR LSSNEETDSH ISCQLNLSLA  360
SSSLQVNRSP SLTRMSQLGQ EIGKVSDSRS YANNKDSDTR RFENSKNMVD EEAALSSPKE  420
GPNTNQAPAA PPVRVNDVFW EQFLTERPGS SDNEEASSSY RANPYEEQED KRCKATQCNS  480
SIGVSILELG HALKASEVDV MVRRVCSKKL EDCLKEQEME SESSRRVLVM QRRYISYETL  540
RRDMVPCAKP GASYYDCNAG QANPYNRGCE VITRCARDIK DNKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-178	HSF family protein

Link Out ? help Back to Top
Ensembl	OMO96611