PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96477

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 344aa MW: 38431.1 Da PI: 5.9191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96477	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.5e-13	141	192	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ OMO96477 141 QRMTHITVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 192 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MALEAVVFPQ DPFTYACKEF FYPAAAWSND FCFQEEEHKA LLAILDNNVN GDIEQGNTHH 60 LHANWDSSST SVMQPHDNHQ WDPYSSPETC TVDQSLPAAG FPAAMEAPPP TAAPTTTTTT 120 NNRRKRRRTR SSKNKEELEN QRMTHITVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI 180 IGGAINFVKE LEQLLQSMES HNRNTNTTSQ QQKPFADFFT FPQFSTPATQ CNSNSHSPSP 240 PPMAAEPMAA AESMADIEVT MVETHANLKI LSKKQPRQLL KLVANLQSLG LTILHLNVAT 300 TADDMALYSI SVKVEEGCHL NTVDEIAAAV NQMLRRIQEE AAFS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MALEAVVFPQ DPFTYACKEF FYPAAAWSND FCFQEEEHKA LLAILDNNVN GDIEQGNTHH  60
LHANWDSSST SVMQPHDNHQ WDPYSSPETC TVDQSLPAAG FPAAMEAPPP TAAPTTTTTT  120
NNRRKRRRTR SSKNKEELEN QRMTHITVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI  180
IGGAINFVKE LEQLLQSMES HNRNTNTTSQ QQKPFADFFT FPQFSTPATQ CNSNSHSPSP  240
PPMAAEPMAA AESMADIEVT MVETHANLKI LSKKQPRQLL KLVANLQSLG LTILHLNVAT  300
TADDMALYSI SVKVEEGCHL NTVDEIAAAV NQMLRRIQEE AAFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	RKRRR
2	124	129	RKRRRT
3	142	153	RMTHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-96	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO96477