PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96318
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family YABBY
Protein Properties Length: 335aa    MW: 38162.6 Da    PI: 9.4467
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96318genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY349.7e-11835132159
     YABBY 132 fikeeiqrikasnPdishreafsaaakn 159
               + +eeiqrika+n dish+eafs ++kn
  OMO96318   8 LFREEIQRIKANNQDISHKEAFSKTTKN 35 
               468************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MAWYMSNLFR EEIQRIKANN QDISHKEAFS KTTKNKLMPS SLDYSSLQGY CSLRIIRVGT  60
YGSPIPGNRE ELWRYMKDKS DSSSRPWALG GNFNTIASSA DKSNFNSRDV NRCRKFQEQL  120
YTGKEEDPIN PGSPISFPTI PREELEFIHR PVSADEIEKA MFSIGPLKAP SPDGFQAIFF  180
QKNWEIVKED FISMVKEAVE KVRASRGGPE ISHIFFADDL VLFSEANIEK VTVVKESLDD  240
FSKWSRQTVS LAKSKIFITK NILRRLMRAI CDASGIAKTD DLGRSTLIQS ASGPIPYYIM  300
QTTHIPIAIC DEIDKLNRGF LWGSTPRKRR VHLMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.19e-07YABBY family protein