PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96273

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 760aa MW: 82207.5 Da PI: 7.6989

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96273	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	437	474	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + OMO96273 437 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 474 554459******************************88 PP
2	BELL	123.8	6.7e-40	301	372	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q+v+ssFe++ag g+ak+Yt+lAl++iS++FrcLkdaia+qi OMO96273 301 QRQELQMKKAKLVSMLDEVEQRYRQYHHQMQIVVSSFEQAAGFGAAKSYTALALQTISKQFRCLKDAIAGQI 372 69*********************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MATYFHGSSE FQAASAAAAA AATPDGTMHT LFLMNPNYVP VPYSDTPPTS SATNMFFLNP 60 AGNALNPSSL PHAPPPSHHH HHQLLGLPLP TPTASTDDPS RPSPLQGIVS GIHYNLWAGS 120 NNIDHQNNST GGSSHHQVVS AAAAGSSGGA QDMASQLGLR RGGPVVSPRQ GLSLSLSSQQ 180 QQVYRSSNNV ETDHNIQGQI SVADEMRISA GNSASSVSVV SNGMNNPGGV QSVVLGSKYL 240 RAAQELLDEV VNVGKGIKSS DVSEGTKERI KMNKDSVAGG EGSSGGVENG AKRGPELTTA 300 QRQELQMKKA KLVSMLDEVE QRYRQYHHQM QIVVSSFEQA AGFGAAKSYT ALALQTISKQ 360 FRCLKDAIAG QIKATSKSLG EEDCLGAKVE GSRLRFVDHQ LRQQRALQQL GMIQHNAWRP 420 QRGLPERAVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV 480 EEMYLEEVKE QERNGSEEKS EPKDHSGSAS SSAQESASLN KMDHQVKSQS SRPNKSINQI 540 NITSPTDQFS NSTISTSPNM RGTSLLMPPT AFNLIGSSDL IDVNAAQRSP KKPRGNILQD 600 MHNNSHSSIL SMDMDMKQGE TRPEINIKFG DERMSSKDSY SLLTGTANHG DGGGGFGGYS 660 TMGEIGRFDP EQLTPRFHGN SVSLTLGLPH CDNLSLSGNQ QNFLSNQNIQ LGKRLELGPS 720 ESDFCGINTQ QASHSSTGYD SIELHNRKRF AAPLLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MATYFHGSSE FQAASAAAAA AATPDGTMHT LFLMNPNYVP VPYSDTPPTS SATNMFFLNP  60
AGNALNPSSL PHAPPPSHHH HHQLLGLPLP TPTASTDDPS RPSPLQGIVS GIHYNLWAGS  120
NNIDHQNNST GGSSHHQVVS AAAAGSSGGA QDMASQLGLR RGGPVVSPRQ GLSLSLSSQQ  180
QQVYRSSNNV ETDHNIQGQI SVADEMRISA GNSASSVSVV SNGMNNPGGV QSVVLGSKYL  240
RAAQELLDEV VNVGKGIKSS DVSEGTKERI KMNKDSVAGG EGSSGGVENG AKRGPELTTA  300
QRQELQMKKA KLVSMLDEVE QRYRQYHHQM QIVVSSFEQA AGFGAAKSYT ALALQTISKQ  360
FRCLKDAIAG QIKATSKSLG EEDCLGAKVE GSRLRFVDHQ LRQQRALQQL GMIQHNAWRP  420
QRGLPERAVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV  480
EEMYLEEVKE QERNGSEEKS EPKDHSGSAS SSAQESASLN KMDHQVKSQS SRPNKSINQI  540
NITSPTDQFS NSTISTSPNM RGTSLLMPPT AFNLIGSSDL IDVNAAQRSP KKPRGNILQD  600
MHNNSHSSIL SMDMDMKQGE TRPEINIKFG DERMSSKDSY SLLTGTANHG DGGGGFGGYS  660
TMGEIGRFDP EQLTPRFHGN SVSLTLGLPH CDNLSLSGNQ QNFLSNQNIQ LGKRLELGPS  720
ESDFCGINTQ QASHSSTGYD SIELHNRKRF AAPLLPDFVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.1	1e-117	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO96273