PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96220
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 370aa    MW: 40435.6 Da    PI: 6.2966
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96220genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17258292135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  OMO96220 258 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 292
               99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MEAPEFYQGS SYCSQFAPEK PPAGDHFIVE DLLDFSNEDA VITDGNFDSS VAGHSTDSST  60
VTAVDSCNSS SFSGSEPNFA GDIGCRGLTD AQFAGDLCVP YDDLAELEWL SNFVEESFSS  120
EDLQKLQLIS GVKTRPDESS ETRGFQSSVG LPNQISNVID NSDNNDGNNS SNPIFHPDMS  180
VPAKARSKRS RAAPCNWASR LLLLSPTTSS SEPDIVVPVQ PPPPQSHPGK KPGKTTTSKK  240
KDGGEGGGLA ANSDGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA  300
SPTFVLTKHS NSHRKVLELR RQKEMQRAHS QHHHQQQFMQ HHHQNMVFDV SNGDDYLIHQ  360
HVGPDFRQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-56GATA family protein