PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO96056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 27667.8 Da PI: 8.2011 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.2 | 3.1e-29 | 13 | 116 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C++ C l+p++ + +q++++ +++k++G++ +++l++a p++ r+ +++sl+yeA+ r+ +PvyG+vg++++++++l+q++++++l OMO96056 13 SCNGCRVLRKGCTETCSLRPCLqwlptALSQANATLFLAKFYGRAGLVNLINAGPQNLRPGIFKSLLYEACGRIVNPVYGSVGLMWSGKWHLCQAAVDAVL 113 6*********************9995444899****************************************************************99988 PP DUF260 97 lke 99 ++ OMO96056 114 NGA 116 765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MVMDFQKLLM RMSCNGCRVL RKGCTETCSL RPCLQWLPTA LSQANATLFL AKFYGRAGLV 60 NLINAGPQNL RPGIFKSLLY EACGRIVNPV YGSVGLMWSG KWHLCQAAVD AVLNGAPIMQ 120 VSLDSELTDP SLALNKLSCD IRHVSKEKDQ KSSDDALRKI KSRGRFKRSA PKPKVVKEEV 180 YESASHESGL SLGGDGGGEG DAVSVETVEA SLAKTDESAD GSDLELELTL GFEPRPRKRA 240 NGCDGAACGM NLVKGLC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 4e-73 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO96056 |