PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95787

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 433aa MW: 48133.1 Da PI: 9.3062

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95787	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68	1.9e-21	24	112	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W k+e laLiea++e++ +lrrg+lk+ +W++vs+++ ++ g ++s+ qC++k+e+l+kry+++k+++ k+ + ss++ +f l+ OMO95787 24 CWNKEESLALIEAYKERWFALRRGNLKASDWDAVSAAVssvADPGTTKSSLQCRHKIEKLRKRYRAEKQRSLKNPGKFSSSWDLFPLLD 112 7***********************************999999*************************99999*****9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MSTPTSSPPQ PSPVTTTRRV PPPCWNKEES LALIEAYKER WFALRRGNLK ASDWDAVSAA 60 VSSVADPGTT KSSLQCRHKI EKLRKRYRAE KQRSLKNPGK FSSSWDLFPL LDSMNFASTS 120 VAGSDDQDHS FEQKVSVVDG YSSKLKSRGK IDGNSGSNLG FNHEFQGGYG KFGGGYGLKS 180 PSHRDFVAKG MNFKNNSRIG DVYGSMDDFD PGFSEGVDSI GEYPVRTLGN RSFMNPEFKP 240 KSYYSPNLGY EYYNDMEEYD IDEAMGYGGV SGAWESAPPG FHPKKRSRVY SSFEPGVDYR 300 GSNGFASSSR PGLGGKNAGV EVKSSVDPVQ EVVTSIKLLG ERFLRMEKMK METVKEIEKM 360 RMEMELKHNE MILESQQKIV DAFAKALLDS KKRKKKPTTL PANVNGNGVE EWQGDDTIDA 420 KKVDMVSPNV RIV

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MSTPTSSPPQ PSPVTTTRRV PPPCWNKEES LALIEAYKER WFALRRGNLK ASDWDAVSAA  60
VSSVADPGTT KSSLQCRHKI EKLRKRYRAE KQRSLKNPGK FSSSWDLFPL LDSMNFASTS  120
VAGSDDQDHS FEQKVSVVDG YSSKLKSRGK IDGNSGSNLG FNHEFQGGYG KFGGGYGLKS  180
PSHRDFVAKG MNFKNNSRIG DVYGSMDDFD PGFSEGVDSI GEYPVRTLGN RSFMNPEFKP  240
KSYYSPNLGY EYYNDMEEYD IDEAMGYGGV SGAWESAPPG FHPKKRSRVY SSFEPGVDYR  300
GSNGFASSSR PGLGGKNAGV EVKSSVDPVQ EVVTSIKLLG ERFLRMEKMK METVKEIEKM  360
RMEMELKHNE MILESQQKIV DAFAKALLDS KKRKKKPTTL PANVNGNGVE EWQGDDTIDA  420
KKVDMVSPNV RIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	395	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-18	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO95787