PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95769

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GATA

Protein Properties

Length: 534aa MW: 59673.8 Da PI: 6.9979

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95769	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.2e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ OMO95769 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDEYEDH 60 RASKVRSISI NKNKEVKLLK RKPNHDIAVV TPDYYQGFRK FVDEDTSNRS SSGSAISNSE 120 SCAQFGSADA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLY TILHEQQSSY 180 FSGSSEEDLL LESETPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVEN KQYSMNEAYS 240 HSSSFPAYND SNGIKFSGHE IEKAKNMQHD QMKRDKVQHE KSLLLESRSS LLCNIDLNDI 300 LNFEEFVKHF THEEQQHLMQ YLPPLDIAKL PDSLNSMFDS PQFKENLCYF QQLLEEGVFN 360 ISAPGVKAED CKTLKRLTLF NLTKSHWVER RHLLKKCKSG NGGSVTARGP NAITSNNLVT 420 MKRPRDSQSQ NFSEARTLKS PKRVIMKATY ENKEHLDNEA SCFSPRSLFA LPPDGSSLVL 480 DSLHFVDESS DQDLLLDVPS NGSFAQAELL HPTISFGKQA STSSSSAHPH LVHP

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDEYEDH  60
RASKVRSISI NKNKEVKLLK RKPNHDIAVV TPDYYQGFRK FVDEDTSNRS SSGSAISNSE  120
SCAQFGSADA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLY TILHEQQSSY  180
FSGSSEEDLL LESETPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVEN KQYSMNEAYS  240
HSSSFPAYND SNGIKFSGHE IEKAKNMQHD QMKRDKVQHE KSLLLESRSS LLCNIDLNDI  300
LNFEEFVKHF THEEQQHLMQ YLPPLDIAKL PDSLNSMFDS PQFKENLCYF QQLLEEGVFN  360
ISAPGVKAED CKTLKRLTLF NLTKSHWVER RHLLKKCKSG NGGSVTARGP NAITSNNLVT  420
MKRPRDSQSQ NFSEARTLKS PKRVIMKATY ENKEHLDNEA SCFSPRSLFA LPPDGSSLVL  480
DSLHFVDESS DQDLLLDVPS NGSFAQAELL HPTISFGKQA STSSSSAHPH LVHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-142	GATA family protein

Link Out ? help Back to Top
Ensembl	OMO95769