PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95714

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 1516aa MW: 168149 Da PI: 7.2867

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95714	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	417	439	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C+++F++++++ H+ + H OMO95714 417 KCHKCPMTFNQQDDFIGHLLSsH 439 8*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 1516 aa Download sequence
MASATVDHRL QHRDSSLHLE SIPLVDLRLL SQPELLSLSF CSTSPSPSNA ETEIFTPKID 60 RSVFNESAGS RKQTFSRLRL AAPRNYLHHH HSSPSSTSFA SVPRRLNPEP LDEESSGILP 120 LLKSLFNIDD SLTANTNGNE PEDDKDLVPV QIEYPTGNSV LQNIPVGIVS CSGSKRKRGR 180 PRKDEKVNWL IESESLVVEE QKDKAVFDRV NKTSNAGEIS SCSEKKRTRG RPRRDESQSK 240 VIESEEKKVE SEIEKVASGS VEAILGIEEE LRRRTEGMEK EADLLEYLGG LEGEWASKSL 300 KKRIVVADGF GEVLPKGWKL MLFVKRRAGH AWLACSRYIS PDGQQFVSCK EVSSYLLSFG 360 GLKDSSQSTS SQTGCGIGSG VKPTSGNLPI TCVSSQHKKK APLLGRPIEV QRAETIKCHK 420 CPMTFNQQDD FIGHLLSSHQ GTAKSSGQTT QTNEEVIIKN GKYECQFCNE LFEERSCYSN 480 HLEIHMKNNM KKDDGSVGAS TTQNSIRPFN PPNNNEMRPD FPRSQANENA VVGRDTHADS 540 HECNLLSRDK EDIKFNGNEK TLVDENIEKQ NKCGLTNSEG EVTETAAVEF NVCLSSEKLL 600 FTASAKDEKA DVALKSIEEK KTEMVSSTSL HAANAEKNSD EKIEDRHFAS FMKKMEADFK 660 DKFTGDDPKA SCTNAHTRPN DVMIDIEQKN CSKGCSVIFS SNEGGNLVDH VKGTSAIIDS 720 AQDRGYRCSL TAYKDEQARV ITNKLTVASS GTLYDPESFV LSESGNNVST IGFQSDHCIK 780 KPPQQDSKSA LPTLHGRDQN CFTNNSAFKV SSQRVERPEH AEVEKSSGLM QDVHSHSRGF 840 DPNILDNVRQ ARTNAYSLVS SPYKKTFTNT LEERKQLKGS ESSVYEQYAN QQNSYNATSM 900 NNFSFSTLGE RKHKVQSPFN DNAHARVGTF DLTSTGLQSY SPLFSGNGER FSGKTYVPGI 960 SGDTVYEPKQ NIAGKTHVPG IGGGTVYEPK QNIAGKTHVP GISGGTVYEP KQSIAAQGEP 1020 RLGDFENARN NEVMIGFGNH AQRPEDSMTG LTWKSDELLQ PSGYYPTFDV MSHKGESEMY 1080 NISGKCGSVS GFEELRPDSI GHMEYDFLTA QPSSRSGGSK VSSNDSEMAV RSDSSIWFGK 1140 EALPLLPKVA GRHQIAAENR WKADESGSWV IGLPSGRISE CSNSREQKKA LKTYVVLYEA 1200 WQTGILLFAF WGRLTFSISV PVRVPLCPKS SVVDAIFDFR DSYCPAANSE FTESIDFVGV 1260 TEGDEVSLLK ALNMVHKNSH EYVAVLFYAS WCPFSRSFRP SFSFLASSYP SIPHLAVEES 1320 TVRPSILSKY GVHGFPTLFL LNSTMRVRYH GNRSFESLGA FYSEVTGIKD KSLDKTSLDT 1380 IGCLSNHEKH NNTEQESCPF SWARSPENLL RQETYLALAT AFVMFRLLYL LYPTLLVIFQ 1440 FTWRRLIRNV KLGSMFEHPL AYLRRAIQLF KSLKEPCKRR NLQGAMNARA WASKSLATVS 1500 IGDANTSRAV PMSGCR

Sequence ? help Back to Top

Protein Sequence Length: 1516 aa Download sequence

MASATVDHRL QHRDSSLHLE SIPLVDLRLL SQPELLSLSF CSTSPSPSNA ETEIFTPKID  60
RSVFNESAGS RKQTFSRLRL AAPRNYLHHH HSSPSSTSFA SVPRRLNPEP LDEESSGILP  120
LLKSLFNIDD SLTANTNGNE PEDDKDLVPV QIEYPTGNSV LQNIPVGIVS CSGSKRKRGR  180
PRKDEKVNWL IESESLVVEE QKDKAVFDRV NKTSNAGEIS SCSEKKRTRG RPRRDESQSK  240
VIESEEKKVE SEIEKVASGS VEAILGIEEE LRRRTEGMEK EADLLEYLGG LEGEWASKSL  300
KKRIVVADGF GEVLPKGWKL MLFVKRRAGH AWLACSRYIS PDGQQFVSCK EVSSYLLSFG  360
GLKDSSQSTS SQTGCGIGSG VKPTSGNLPI TCVSSQHKKK APLLGRPIEV QRAETIKCHK  420
CPMTFNQQDD FIGHLLSSHQ GTAKSSGQTT QTNEEVIIKN GKYECQFCNE LFEERSCYSN  480
HLEIHMKNNM KKDDGSVGAS TTQNSIRPFN PPNNNEMRPD FPRSQANENA VVGRDTHADS  540
HECNLLSRDK EDIKFNGNEK TLVDENIEKQ NKCGLTNSEG EVTETAAVEF NVCLSSEKLL  600
FTASAKDEKA DVALKSIEEK KTEMVSSTSL HAANAEKNSD EKIEDRHFAS FMKKMEADFK  660
DKFTGDDPKA SCTNAHTRPN DVMIDIEQKN CSKGCSVIFS SNEGGNLVDH VKGTSAIIDS  720
AQDRGYRCSL TAYKDEQARV ITNKLTVASS GTLYDPESFV LSESGNNVST IGFQSDHCIK  780
KPPQQDSKSA LPTLHGRDQN CFTNNSAFKV SSQRVERPEH AEVEKSSGLM QDVHSHSRGF  840
DPNILDNVRQ ARTNAYSLVS SPYKKTFTNT LEERKQLKGS ESSVYEQYAN QQNSYNATSM  900
NNFSFSTLGE RKHKVQSPFN DNAHARVGTF DLTSTGLQSY SPLFSGNGER FSGKTYVPGI  960
SGDTVYEPKQ NIAGKTHVPG IGGGTVYEPK QNIAGKTHVP GISGGTVYEP KQSIAAQGEP  1020
RLGDFENARN NEVMIGFGNH AQRPEDSMTG LTWKSDELLQ PSGYYPTFDV MSHKGESEMY  1080
NISGKCGSVS GFEELRPDSI GHMEYDFLTA QPSSRSGGSK VSSNDSEMAV RSDSSIWFGK  1140
EALPLLPKVA GRHQIAAENR WKADESGSWV IGLPSGRISE CSNSREQKKA LKTYVVLYEA  1200
WQTGILLFAF WGRLTFSISV PVRVPLCPKS SVVDAIFDFR DSYCPAANSE FTESIDFVGV  1260
TEGDEVSLLK ALNMVHKNSH EYVAVLFYAS WCPFSRSFRP SFSFLASSYP SIPHLAVEES  1320
TVRPSILSKY GVHGFPTLFL LNSTMRVRYH GNRSFESLGA FYSEVTGIKD KSLDKTSLDT  1380
IGCLSNHEKH NNTEQESCPF SWARSPENLL RQETYLALAT AFVMFRLLYL LYPTLLVIFQ  1440
FTWRRLIRNV KLGSMFEHPL AYLRRAIQLF KSLKEPCKRR NLQGAMNARA WASKSLATVS  1500
IGDANTSRAV PMSGCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	204	KRKRGRPRKDEKVNWLIESESLVVEEQKDK

Link Out ? help Back to Top
Ensembl	OMO95714