PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO95584
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 759aa    MW: 82411.8 Da    PI: 6.4815
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO95584genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.66.4e-1293717292374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                +lLl+cAeavs++++e+a+++L +ls+l++p g++ qR+aayf eA++arl++s+ ++++alp+ ++s  ++++ ++a+++f+ +sP++kfsh+taNqaI
  OMO95584 371 LTLLLQCAEAVSANNFEEANRMLLELSQLSTPFGTSAQRVAAYFSEAMSARLVSSCLGISAALPSIPQS--HTQKMVSAFQVFNGISPFIKFSHFTANQAI 469
               579************************************************************999998..5899999*********************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +le+e+L+v+++Ea+a
  OMO95584 470 QEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGLPFEFCP-VAEKVGNLEPERLNVSKREAVA 565
               ***********************************************....9**************************.7********************* PP

      GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
               V++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl  f+ea++yysalfdsl a++++eseer++vE++ll++ei+nv+a  g +
  OMO95584 566 VHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGTFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLALGGPS 659
               ****9..999999999999....**********************.899**************************************************** PP

      GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               r  ++ ++++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  OMO95584 660 RSSEEVKFHNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 729
               *********************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    
MASEIADYHT RFPRRSLPSD NMACSFLAAT TTTATSHVNP NPLLNYSTIN MNTTINTIPS  60
SNFTAVTSVG APVPVPGPAF LSTTTSSNLD NLSTSIISPQ PPAVCGFSGL PLFPPTERDR  120
NTVAAAVTST TTVAAASPLG LTPISNSMDD TSATAWIDGI IRDLIHTSSN VSIPQLIHNV  180
REIIYPCNPN LAALLEYRLR SLMDPLERRR KDQTPPLHLP LAANLLQRPQ QGSASGLTLH  240
LDSAALDNTL PNYSLTDSIS PYLSWGITPL PIPNTTAATG NNNQISTTSL PATTPPVLSL  300
NQTQHQAQVS QQPPQEQAAP EVEKTTTTTS TAAVPAATPT SGDQTAQACS VRDSKEELRQ  360
QKRDEEGLHL LTLLLQCAEA VSANNFEEAN RMLLELSQLS TPFGTSAQRV AAYFSEAMSA  420
RLVSSCLGIS AALPSIPQSH TQKMVSAFQV FNGISPFIKF SHFTANQAIQ EAFEREERVH  480
IIDLDIMQGL QWPGLFHILA SRPGGPPHVR LTGLGTSLEA LEATGKRLSD FADKLGLPFE  540
FCPVAEKVGN LEPERLNVSK REAVAVHWLQ HSLYDVTGSD TNTLWLLQRL APKVVTVVEQ  600
DLSHAGSFLG TFVEAIHYYS ALFDSLGASY GEESEERHVV EQQLLSKEIR NVLALGGPSR  660
SSEEVKFHNW REKLQQSGFK GISLAGNAAT QATLLLGMFP SDGYTLVEDN GALKLGWKDL  720
CLLTASAWRP LIHHHHHHHH HHHHPNPTNV ATNIHRFSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein