PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95196

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 561aa MW: 64916.9 Da PI: 8.3909

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95196	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.5	5.1e-30	120	205	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea OMO95196 120 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 205 8***********************************999*************************97..66678*****85 PP
2	trihelix	48.7	2e-15	400	485	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses...sstcpyfdqle 86 +W ++ev Li++r+++e + + ++ lWee+ +km + g+er +++Ckekw+ +++++ +++ + k+++e+ +++ +yf+ql+ OMO95196 400 KWAEHEVSSLIQLRKSLEPNRYS---EERLWEEIEAKMVSLGYERDANECKEKWNTMQMYFNMTNAESYKKQKEDfrrRNSNSYFQQLD 485 7**************987655...589*********************************9999888765411145678999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MEMGDQYGLP DLRRFLARRT HFPATQQPSE PYFVHRNVAP LAPYEAFMVT NNGLPMVPTG 60 ALLRFGGGHD NHHFSAAASA SAFAGNGIGS SGSGSGSAIF GVEMENGGWS FGNFDGGNSR 120 WPRQETLTLL EIRSRLDSKF KEANQKGPLW DEVSRIMAEE HGYQRSGKKC REKFENLYKY 180 YKKTKEGKAG RQDGKNYRFF RQLEALYGET SNQSSLSGTN LAQKASLVSQ TPNIQENRDH 240 KLRSESLSFS NASEFETSSS ENNNDQEDLS AIAFMMKHSM EEKQKRVINI ESGSSSRDVN 300 KIKGWKTKVK DLVESQMKKI IDSQDVWMER MLKTIEDKEQ ERMLKEEEWR RQEAARFEKE 360 HEFWAKERAW VEARDASLMK VLKKFPSSAE EETHSQNTRK WAEHEVSSLI QLRKSLEPNR 420 YSEERLWEEI EAKMVSLGYE RDANECKEKW NTMQMYFNMT NAESYKKQKE DFRRRNSNSY 480 FQQLDSYYGQ GNSSNNNNNN ENDNDSKQRG SPSSNSCVGT SHHQQLRDIN SFHIALNQGD 540 DQQHLWDRYR LKLSKEKNRQ I

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MEMGDQYGLP DLRRFLARRT HFPATQQPSE PYFVHRNVAP LAPYEAFMVT NNGLPMVPTG  60
ALLRFGGGHD NHHFSAAASA SAFAGNGIGS SGSGSGSAIF GVEMENGGWS FGNFDGGNSR  120
WPRQETLTLL EIRSRLDSKF KEANQKGPLW DEVSRIMAEE HGYQRSGKKC REKFENLYKY  180
YKKTKEGKAG RQDGKNYRFF RQLEALYGET SNQSSLSGTN LAQKASLVSQ TPNIQENRDH  240
KLRSESLSFS NASEFETSSS ENNNDQEDLS AIAFMMKHSM EEKQKRVINI ESGSSSRDVN  300
KIKGWKTKVK DLVESQMKKI IDSQDVWMER MLKTIEDKEQ ERMLKEEEWR RQEAARFEKE  360
HEFWAKERAW VEARDASLMK VLKKFPSSAE EETHSQNTRK WAEHEVSSLI QLRKSLEPNR  420
YSEERLWEEI EAKMVSLGYE RDANECKEKW NTMQMYFNMT NAESYKKQKE DFRRRNSNSY  480
FQQLDSYYGQ GNSSNNNNNN ENDNDSKQRG SPSSNSCVGT SHHQQLRDIN SFHIALNQGD  540
DQQHLWDRYR LKLSKEKNRQ I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-100	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO95196