PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95002

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 438aa MW: 48671.1 Da PI: 7.4716

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95002	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	90	112	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ff +tG Ck+G++CkF+H+ OMO95002 90 EDCTFFVKTGNCKFGSNCKFNHP 112 89********************9 PP
2	zf-CCCH	30.5	6.3e-10	173	195	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ +G CkyG++C+++H++ OMO95002 173 ECKYYLTSGGCKYGESCRYSHSK 195 7********************95 PP
3	zf-CCCH	38.5	1.9e-12	223	245	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C yG++C+F+H+ OMO95002 223 KECPYYMRTGSCAYGANCRFNHP 245 68********************9 PP
4	zf-CCCH	32.4	1.6e-10	365	389	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f++tG+Cky + CkF+H++ OMO95002 365 EPECPYFMKTGYCKYKAACKFHHPK 389 799********************96 PP
5	zf-CCCH	31.4	3.2e-10	410	435	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ ++G+CkyG++C+F+H++ OMO95002 410 DRKICWNYEKFGICKYGGNCHFHHPE 435 7899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MGSCEECSLL PETPGQTQTE SASGFNSKTL FSNLNPGSEK GEESLVEGLR NLALEDNEWN 60 GYGEDNNNQN LGVEWQNGDS FHHPLRPYAE DCTFFVKTGN CKFGSNCKFN HPVGRGFQYY 120 RATGGCKFGN SCRYRHSSGD NVLTPLQENS FELPVGIKAK DKDGFIQQTG QIECKYYLTS 180 GGCKYGESCR YSHSKVKPRY LEKYESPQPE LNFLGLPIRT LEKECPYYMR TGSCAYGANC 240 RFNHPDPSAA EGSNSCSSVF SGFGGHSSGN HNGGSNPLPL LSTSKPIGAS LSLNRMSDKH 300 DPYLDHNSSH AYGTHLNSEW NGSQEKAFHP YVAPSVPNAA VKVGDISELH QGQIQVSEYP 360 ERAGEPECPY FMKTGYCKYK AACKFHHPKT RSLKPPAVMF SRAGLPLRPD RKICWNYEKF 420 GICKYGGNCH FHHPENLF

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MGSCEECSLL PETPGQTQTE SASGFNSKTL FSNLNPGSEK GEESLVEGLR NLALEDNEWN  60
GYGEDNNNQN LGVEWQNGDS FHHPLRPYAE DCTFFVKTGN CKFGSNCKFN HPVGRGFQYY  120
RATGGCKFGN SCRYRHSSGD NVLTPLQENS FELPVGIKAK DKDGFIQQTG QIECKYYLTS  180
GGCKYGESCR YSHSKVKPRY LEKYESPQPE LNFLGLPIRT LEKECPYYMR TGSCAYGANC  240
RFNHPDPSAA EGSNSCSSVF SGFGGHSSGN HNGGSNPLPL LSTSKPIGAS LSLNRMSDKH  300
DPYLDHNSSH AYGTHLNSEW NGSQEKAFHP YVAPSVPNAA VKVGDISELH QGQIQVSEYP  360
ERAGEPECPY FMKTGYCKYK AACKFHHPKT RSLKPPAVMF SRAGLPLRPD RKICWNYEKF  420
GICKYGGNCH FHHPENLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	1e-77	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO95002