PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94839

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 404aa MW: 45501.2 Da PI: 7.9741

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94839	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	89	179	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k ++ps+v+ +l l k+f+++h +e++k+l+lede+g +++ ++ ++k + l +GWk+F a++L gD++vF+l++ ++f +v ++rk OMO94839 89 FIKCMLPSHVSGGFWLGLAKEFCSKHL--PEKNKMLVLEDEEGGEYKTNYLVDKVG----LNGGWKGFSIAHNLLMGDVCVFHLVKPTKF--KVYIVRK 179 89**********************5..456789***********666655....*********************9986777..9988886 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MVVSREQKRS SVKAKPGRPA KRNLIRKKPS ALDKMTINQI VSHEKEKAKC KKVKRATLDD 60 LYENDEVKHA VIERAKEIQD NLSSKFPSFI KCMLPSHVSG GFWLGLAKEF CSKHLPEKNK 120 MLVLEDEEGG EYKTNYLVDK VGLNGGWKGF SIAHNLLMGD VCVFHLVKPT KFKVYIVRKK 180 ASEEADVAFS LLKLEASIQE MDHGKSSLSL IREGAKICEK TTDKSGENYE AEETIISEDT 240 APKQKEMDLE NDDPTHSSSH SSEELRSEVI DGIKLCDSVV DFAEVRSFRN FIIAVNGLII 300 NSELSEYYQR KYYDLCRSQN SYLHDHLVKG LNCKLVCGII SETVNIAEAI RAAEVTTPVH 360 SLETWNSTLK PFQGLGMKVG FLSARLEQLI SLSLKFREAA NAPW

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MVVSREQKRS SVKAKPGRPA KRNLIRKKPS ALDKMTINQI VSHEKEKAKC KKVKRATLDD  60
LYENDEVKHA VIERAKEIQD NLSSKFPSFI KCMLPSHVSG GFWLGLAKEF CSKHLPEKNK  120
MLVLEDEEGG EYKTNYLVDK VGLNGGWKGF SIAHNLLMGD VCVFHLVKPT KFKVYIVRKK  180
ASEEADVAFS LLKLEASIQE MDHGKSSLSL IREGAKICEK TTDKSGENYE AEETIISEDT  240
APKQKEMDLE NDDPTHSSSH SSEELRSEVI DGIKLCDSVV DFAEVRSFRN FIIAVNGLII  300
NSELSEYYQR KYYDLCRSQN SYLHDHLVKG LNCKLVCGII SETVNIAEAI RAAEVTTPVH  360
SLETWNSTLK PFQGLGMKVG FLSARLEQLI SLSLKFREAA NAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	9e-43	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO94839