PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94741

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 309aa MW: 35072.3 Da PI: 8.6107

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94741	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.5	5.7e-21	30	120	1	81
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt++e+ +Li+a+ +e+r+++++ +W++vs++++++g++r+p+qC+++w+nl ++kkik++e++ +e++s +++ OMO94741 30 RWTREETIVLIQAKLAIEKRVGARNrssdqnvsvsVSVSKWDSVSSYCKQHGVRREPVQCQKRWSNLLVDFKKIKTWESQIMKEDESFWKL 120 8*****************99765556667777799*****************************************99999877765 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MQKNATSPLD EAKEQTFQAT DGKKNTRHAR WTREETIVLI QAKLAIEKRV GARNRSSDQN 60 VSVSVSVSKW DSVSSYCKQH GVRREPVQCQ KRWSNLLVDF KKIKTWESQI MKEDESFWKL 120 TSDFRREIKL PGLFDRQVYD ILDGNGRRFA DAVAATPLAQ LTVTTEMDND RIDQEAAAEE 180 DQVNEEKEAN EESGQANEKE AIATRSPLKT TGSGSPISGE VRETCPCSIA RRGSMIQEGL 240 KRRRLSMEGS KDISWGKVLE RNSNMINSQL EAQNKNYQLD RDQRKEQADS LVHALNKLTD 300 ALVKIANKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	245	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-56	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO94741