PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO94698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | ARF | ||||||||
Protein Properties | Length: 851aa MW: 94610 Da PI: 6.6392 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 9.7e-24 | 160 | 261 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v+ OMO94698 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVG 257 99*****************************7333.34459************************************************..449999**** PP EE-S CS B3 96 vfrk 99 v+r+ OMO94698 258 VRRA 261 *996 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 286 | 368 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha +t+++F+v+Y+Pr+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk OMO94698 286 AWHAYTTRTIFTVYYKPRTSPAEFIVPFDQYVESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGMEDADPKRWKESKWRCLK 368 79*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence |
MTTSEVSTKG NCVNGRGESF SSGYSEPNDA RNTMEGQNGH STRPAAARDA ETALYTELWH 60 ACAGPLVTVP REGERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPSKILC RVINVQLKAE 120 PDTDEVFAQV TLLPEPTQDE NTVDKEPPIP PPPRFHVHSF CKTLTASDTS THGGFSVLRR 180 HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA 240 GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAY TTRTIFTVYY 300 KPRTSPAEFI VPFDQYVESL KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG MEDADPKRWK 360 ESKWRCLKVR WDDTSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRPRS NAVPSSPDSS 420 VLTREGSSKV TVDPSPGSGF SRVLQGQEFS TLRGNFAESN ESDTAEKSVI WPPSVDDEKI 480 DVASASRRFG SENWMPSGRH EPTYTDLLSG FGSNADSNHG YCQPLGDQTL SAGNPVRKQF 540 LDQEGKLGTW SLMPSGLSLK LSDTNGKPPM QGSDNPYQAR GNGRFSGFGE YPILQGHRIE 600 HSHVNWLMPP PASPHFEQPA HSRELIPKTS LQEHEAGKSR EGNCKLFGIP LFSNPVTSES 660 AVSHPNALSK PVGHMQPASH QVCVFESDQK SEKPKVAEDL SAFNEQDKAL VQPHTREIQN 720 KPSSVSTRSC TKVHKQGIAL GRSVDLTKFN NYDELIAELD QLFEFGGELV ASKKNWLVVY 780 TDDEGDMMLV GDDPWQEFCA MVRKIGIYTR EEVQKMKPGS LNSKGEENPV SAEGMDAKEV 840 KCPSAFSSET C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO94698 |