PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94393

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HB-PHD

Protein Properties

Length: 723aa MW: 81460.5 Da PI: 10.0223

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94393	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.2	4.4e-11	503	548	8	53
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e+L ++F++n ps+ r L+k+lgL+ ++V WF+N R+ OMO94393 503 PPTAVERLRQVFAENELPSKVIRDNLSKELGLEPEKVNKWFKNARY 548 47889***************************************97 PP
2	PHD	40.8	5.1e-14	239	294	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + ++++vlCd +C+++fH+kCl+++l++e++p g w+C+ C++k OMO94393 239 FCAKCKLreAFPDNDIVLCDgTCNRAFHQKCLDPPLDTENIPPGeqGWFCKFCECK 294 699999854455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MRGNGKKVTD HGSAKSSSSK KEAGSKLIAS LQFKKRSKIS HGRVRKPKCH VKKVGSALLK 60 RKVSASVSKG NLTGNNVSSA KKAGNKLNLQ KSNKKGCSKK LNSSKQHGND AAVGSSEENG 120 KKANGDLRTK KLTKKKKKKQ KDKVEVDEAS RLQRRTRYLL IKMKLEQNLI DAYSGEGWKG 180 QSREKIKPEK ELQRAEKQIL DCKLGIRDAI RQLDSLSSVG SIEGSVIAPD GSVYHEHIFC 240 AKCKLREAFP DNDIVLCDGT CNRAFHQKCL DPPLDTENIP PGEQGWFCKF CECKMEIIEA 300 MNAHIGTHFS VDSHWQDIFK DEAAFPDGAI ALLNPEEEWP SDDSEDDDYD PERTEKSCSI 360 SGAATDGDQS DDTDSSTSLS WSLDGEDFSE SGRRENHSVD SAADSCETSD GEIISGRRRR 420 REVDYRQLYD EMFGKDAPPY EQVSEDEDWG PSKRKRREKE SDAASTLMTL YESETKFPNV 480 ETTEMRRQLP SNLKSKRTFF RIPPTAVERL RQVFAENELP SKVIRDNLSK ELGLEPEKVN 540 KWFKNARYLA LKSRKVEKAD QLQSSPRVSK ESGVESPKSK DPDIVALEDM SKATLSPTSK 600 ILKKKVRKSP KSNSLHSSLK RSLRDQVSPA KSSKVSKDLS DDVILKKLLK VKKKRDKKRI 660 IVAGGLQEFE LEMERLCRAK VRLERMQQTL LRLESGKARK MNKKRLHEES VIYIPIAELK 720 EKA

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MRGNGKKVTD HGSAKSSSSK KEAGSKLIAS LQFKKRSKIS HGRVRKPKCH VKKVGSALLK  60
RKVSASVSKG NLTGNNVSSA KKAGNKLNLQ KSNKKGCSKK LNSSKQHGND AAVGSSEENG  120
KKANGDLRTK KLTKKKKKKQ KDKVEVDEAS RLQRRTRYLL IKMKLEQNLI DAYSGEGWKG  180
QSREKIKPEK ELQRAEKQIL DCKLGIRDAI RQLDSLSSVG SIEGSVIAPD GSVYHEHIFC  240
AKCKLREAFP DNDIVLCDGT CNRAFHQKCL DPPLDTENIP PGEQGWFCKF CECKMEIIEA  300
MNAHIGTHFS VDSHWQDIFK DEAAFPDGAI ALLNPEEEWP SDDSEDDDYD PERTEKSCSI  360
SGAATDGDQS DDTDSSTSLS WSLDGEDFSE SGRRENHSVD SAADSCETSD GEIISGRRRR  420
REVDYRQLYD EMFGKDAPPY EQVSEDEDWG PSKRKRREKE SDAASTLMTL YESETKFPNV  480
ETTEMRRQLP SNLKSKRTFF RIPPTAVERL RQVFAENELP SKVIRDNLSK ELGLEPEKVN  540
KWFKNARYLA LKSRKVEKAD QLQSSPRVSK ESGVESPKSK DPDIVALEDM SKATLSPTSK  600
ILKKKVRKSP KSNSLHSSLK RSLRDQVSPA KSSKVSKDLS DDVILKKLLK VKKKRDKKRI  660
IVAGGLQEFE LEMERLCRAK VRLERMQQTL LRLESGKARK MNKKRLHEES VIYIPIAELK  720
EKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	KKLTKKKKKK
2	134	164	KKKKKKQKDKVEVDEASRLQRRTRYLLIKMK
3	135	165	KKKKKKQKDKVEVDEASRLQRRTRYLLIKMK
4	136	166	KKKKKKQKDKVEVDEASRLQRRTRYLLIKMK
5	454	459	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-168	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	OMO94393