PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93882

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 749aa MW: 85419.6 Da PI: 7.7714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93882	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.1	9.9e-31	67	154	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ k++r+r++tr+gCka+++vkk+++gkw v+kl++eHnHel+p OMO93882 67 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRNAGQH--KSKRQRTVTRVGCKAQITVKKQTSGKWAVSKLVKEHNHELVP 154 9***************************************9988..999***********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MDTHPTNLGN ESVDDPTALD LEHPLPFDHY NVNDALPQPL STHGDEDPNL EPYEGMEFDS 60 EQAARIFYNS YARRIGFSTR VSVYQRSRRD GSIICRQIVC SREGFRRNAG QHKSKRQRTV 120 TRVGCKAQIT VKKQTSGKWA VSKLVKEHNH ELVPPDKVHC LRSHRHVSGP ARSLIDTLQA 180 AGMGPSGVMS VLIKESGGIN NVGFTKVDCQ NYMSSSRQRT LGSGGQVVFD YFKRMQTEDP 240 AFFCAVQGDF GNSTGNIFWA DAHSRMNYNH FGDTVTFDTT YRTNRYRVPF APFTGWNHHG 300 QPVLFGCALL LNESESSFVW LFRTWLAAMS GRHPVSITTD QDRIIRAAVA QVFPETRHRF 360 CKWNVFREAQ ERLSDVYHSH PTFEAEFQRC INLTEAVDEF ESCWESLLIR YNLRDNEWLQ 420 SMYNARQHWV PIYLCDTFFG EMSITQRSDS MNSYFDGYIN ASTNAQNLIK QYEKAVLSRY 480 EKEVKADYDT LNNAPALRTP SPMEKQAANL YTKKIFIKFQ EELVETLAYP ATAIDDTGLE 540 VMYRVAKFGE DHTSYFVKFD VFRKKASCSC QMFEFCGIIC KHVLSVFRVA NVLTLPSHYI 600 LKRWTRNAKS GVEVAACTVE LPSNTQESYA ARYDNLCLEV MKLVEEGTES IHIFNVTMDA 660 LHEAAQKVAF AKKHDSAVIK NCSSNSGLQL PSGSKDAEKK IQELSLELEA ASRRCEGYRT 720 KLLAVMKDME EQKLKISVKV QNVRLILKD

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MDTHPTNLGN ESVDDPTALD LEHPLPFDHY NVNDALPQPL STHGDEDPNL EPYEGMEFDS  60
EQAARIFYNS YARRIGFSTR VSVYQRSRRD GSIICRQIVC SREGFRRNAG QHKSKRQRTV  120
TRVGCKAQIT VKKQTSGKWA VSKLVKEHNH ELVPPDKVHC LRSHRHVSGP ARSLIDTLQA  180
AGMGPSGVMS VLIKESGGIN NVGFTKVDCQ NYMSSSRQRT LGSGGQVVFD YFKRMQTEDP  240
AFFCAVQGDF GNSTGNIFWA DAHSRMNYNH FGDTVTFDTT YRTNRYRVPF APFTGWNHHG  300
QPVLFGCALL LNESESSFVW LFRTWLAAMS GRHPVSITTD QDRIIRAAVA QVFPETRHRF  360
CKWNVFREAQ ERLSDVYHSH PTFEAEFQRC INLTEAVDEF ESCWESLLIR YNLRDNEWLQ  420
SMYNARQHWV PIYLCDTFFG EMSITQRSDS MNSYFDGYIN ASTNAQNLIK QYEKAVLSRY  480
EKEVKADYDT LNNAPALRTP SPMEKQAANL YTKKIFIKFQ EELVETLAYP ATAIDDTGLE  540
VMYRVAKFGE DHTSYFVKFD VFRKKASCSC QMFEFCGIIC KHVLSVFRVA NVLTLPSHYI  600
LKRWTRNAKS GVEVAACTVE LPSNTQESYA ARYDNLCLEV MKLVEEGTES IHIFNVTMDA  660
LHEAAQKVAF AKKHDSAVIK NCSSNSGLQL PSGSKDAEKK IQELSLELEA ASRRCEGYRT  720
KLLAVMKDME EQKLKISVKV QNVRLILKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO93882