PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93877

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 1084aa MW: 119791 Da PI: 8.1659

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93877	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls ak+yhrrhkvCevhska+++ v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ OMO93877 153 MCQVDNCKEDLSGAKDYHRRHKVCEVHSKATKAPVGQQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 230 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1084 aa Download sequence
MEEVGAQVAP PIFFHQALAS RFCEPASLQR KRDLSYQTPT FQYQNPSQPR VANPRDNWNP 60 KLWEWDAVRF IAKPLDTEIL QPGTATAELR KKEPVNGNGN GNSMTSKQTA VVNEDEESLQ 120 LNLGGGLNSV EEPVSRPNKK VRSGSPGGTN YPMCQVDNCK EDLSGAKDYH RRHKVCEVHS 180 KATKAPVGQQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLLLP 240 GNRDNAGNGN LDIVNLLTAL ARTQGKNEDK SNNISSGPNR DQLIQILSKI NSLPLPMDLA 300 AKLPNIGVLN KKNQEQGLLG HQNQLNGKNT SSPSTVDLLA ALSATLTSSS ADALAIFSQR 360 SSQSSDSEKT KSNGSDHAAA PSTRSRAPME FTSVGGERSS TSYQSPVEDS ECQIQENRAN 420 LPLQLFSSSP EDDSPPKLAS SRKYFSSDSS NPMEERSPSS SPVVQKLFPM HSTAEAVKHE 480 KMSIGRGTAK YDAEGSRTHG SILPLELFSG SKKATDHGSF QHFPSQAGYT SSSGSDHSPS 540 SLNSDAQDRS GRISFKLFDK DPSHIPGTLR TKIYNWLSNC PSEMESYIRP GCIVLSVYLS 600 MSSVAWEQLD GSLLQYVNAL LQESDSDFWR NARFLIHTGR QLASHKDGKI RLCKSWRTWS 660 SPELFSVSPL AIVDGQETSL ILRGKNLTNP GTKIHCTYMG GYLSMQVTGS ANQGTAFDEV 720 NMGGLRIQVS SPAALGRCFI EVENGFKGNS FPIIIADASI CKELRLLESE FDMETKACDI 780 ISEEHAYDGE RPRSREEVLH FLNELGWLFQ RRSTHRLPES SNFSLCRFKF LLIFSVERDY 840 CALVKVLLDL LVESNMDMDG LSRESIEMLS EIQLLSRAVK RRCRKMADLL IHYSVISSDE 900 NSKRYIFPPN IKGAGGISPL HLAACTSGSD DMVDALTNDP QEIGLSCWSS LLDANGQSPY 960 AYAVMRNNHS YNKLVAGKFA DRRNGQVSLT IGTEDEQSGL SATQLRQIRF RLNQARSSCA 1020 KCAAVATKYH HRFPGSQGLL QRPYVHSMLA IAAVCVCVCL FMRGTPDIGA VAPFKWENLD 1080 FGTI

Sequence ? help Back to Top

Protein Sequence Length: 1084 aa Download sequence

MEEVGAQVAP PIFFHQALAS RFCEPASLQR KRDLSYQTPT FQYQNPSQPR VANPRDNWNP  60
KLWEWDAVRF IAKPLDTEIL QPGTATAELR KKEPVNGNGN GNSMTSKQTA VVNEDEESLQ  120
LNLGGGLNSV EEPVSRPNKK VRSGSPGGTN YPMCQVDNCK EDLSGAKDYH RRHKVCEVHS  180
KATKAPVGQQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLLLP  240
GNRDNAGNGN LDIVNLLTAL ARTQGKNEDK SNNISSGPNR DQLIQILSKI NSLPLPMDLA  300
AKLPNIGVLN KKNQEQGLLG HQNQLNGKNT SSPSTVDLLA ALSATLTSSS ADALAIFSQR  360
SSQSSDSEKT KSNGSDHAAA PSTRSRAPME FTSVGGERSS TSYQSPVEDS ECQIQENRAN  420
LPLQLFSSSP EDDSPPKLAS SRKYFSSDSS NPMEERSPSS SPVVQKLFPM HSTAEAVKHE  480
KMSIGRGTAK YDAEGSRTHG SILPLELFSG SKKATDHGSF QHFPSQAGYT SSSGSDHSPS  540
SLNSDAQDRS GRISFKLFDK DPSHIPGTLR TKIYNWLSNC PSEMESYIRP GCIVLSVYLS  600
MSSVAWEQLD GSLLQYVNAL LQESDSDFWR NARFLIHTGR QLASHKDGKI RLCKSWRTWS  660
SPELFSVSPL AIVDGQETSL ILRGKNLTNP GTKIHCTYMG GYLSMQVTGS ANQGTAFDEV  720
NMGGLRIQVS SPAALGRCFI EVENGFKGNS FPIIIADASI CKELRLLESE FDMETKACDI  780
ISEEHAYDGE RPRSREEVLH FLNELGWLFQ RRSTHRLPES SNFSLCRFKF LLIFSVERDY  840
CALVKVLLDL LVESNMDMDG LSRESIEMLS EIQLLSRAVK RRCRKMADLL IHYSVISSDE  900
NSKRYIFPPN IKGAGGISPL HLAACTSGSD DMVDALTNDP QEIGLSCWSS LLDANGQSPY  960
AYAVMRNNHS YNKLVAGKFA DRRNGQVSLT IGTEDEQSGL SATQLRQIRF RLNQARSSCA  1020
KCAAVATKYH HRFPGSQGLL QRPYVHSMLA IAAVCVCVCL FMRGTPDIGA VAPFKWENLD  1080
FGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	877	882	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO93877