PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93767

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 346aa MW: 38603.8 Da PI: 6.4011

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93767	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++q G g+W++ ++ g++R++k+c++rw +yl OMO93767 14 KGPWTPEEDQKLVHYINQNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.1	1.7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l OMO93767 67 RGKFSQEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLVHYIN QNGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHQPRT DIFASLPQLI ALANLRDLVE SAANPLDEYE HAVRLQAEAV QLAKLQYLQF 180 LLQSAASIPN TNYSQNGINN ADMQEAAFNL ILNSDYSHHH IKETQVPNSA PVGNNATSQP 240 LHHPINAESQ VPFSFQTSLN SDENMGHCSN FTMVNQGDNQ TDNNSSSWPL PSPTTLLPDQ 300 ISLSHNNNNT TGGGDASSSS SYNNGAANSP YWPELYFEDS IMHEIS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSPCCDEN GLKKGPWTPE EDQKLVHYIN QNGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHQPRT DIFASLPQLI ALANLRDLVE SAANPLDEYE HAVRLQAEAV QLAKLQYLQF  180
LLQSAASIPN TNYSQNGINN ADMQEAAFNL ILNSDYSHHH IKETQVPNSA PVGNNATSQP  240
LHHPINAESQ VPFSFQTSLN SDENMGHCSN FTMVNQGDNQ TDNNSSSWPL PSPTTLLPDQ  300
ISLSHNNNNT TGGGDASSSS SYNNGAANSP YWPELYFEDS IMHEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-112	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO93767