PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93635
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 283aa    MW: 31186.7 Da    PI: 5.7882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93635genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.5e-154998255
              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L +++eY++ Lq
  OMO93635 49 RSKHSVTEQRRRSKINERFQILRDLIPNT----DQKRDTASFLLEVIEYVQFLQ 98
              899*************************8....8*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MRTGKGSQEE EEYEEEEFGS KKQGPSSNQT MSVNANKDGK NSDKASAIRS KHSVTEQRRR  60
SKINERFQIL RDLIPNTDQK RDTASFLLEV IEYVQFLQEK VQKYEGSYQG WSSEPTKLMP  120
WSMKNGSGPG STYAGKFDEN NINISPTMIT NAQNPLEHDP IRDAASKTMD RQPELVNKGM  180
PLPTRGDNVL VHPLQRPISE AQSTECLISN ETLSQPEDLT IEGGTISISS VYSHGLLNSL  240
AEALQSAGLD LSQANISVQI DLGKRANRGL TSGTSAKVGL KLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-109bHLH family protein