PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93523

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 491aa MW: 54422.1 Da PI: 8.4178

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93523	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.4e-41	152	227	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk OMO93523 152 CCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHVLAEFDDGKRSCRKRLAGHNERRRKL 227 6*************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MDLPVDSYAR SRKALIGGWD LKPSTDFEAV ESMELMDFGF ADMNKRPFYG NTSMGIFGAE 60 FGNDSAKRVV SPTCMFTSSS YYGDEESGSK HSSSLMESNS QESSLIDLKL GRLADYRDAH 120 DGNFLKETSV VSSVRPALMA KKPRSSYSHT PCCQVYGCNK DLSSSKDYHK RHKVCEVHSK 180 TAKVIVNGIE QRFCQQCSRF HVLAEFDDGK RSCRKRLAGH NERRRKLHFN SLSGKRHKML 240 HSYQGTKFLG NSIPKRMPFV IPNMFQGDFV YEERNEQANQ FQLVKSEKKP ICSPQSAIPI 300 TNGQLGAKSF FHMHGSGKQC VPGTFSSPTE GFNAPNAAST VKDSSGVSRS GCALSLLSAQ 360 SQDLSSHATG IQMTRPLINQ AGRVYHSFEK SAGVSSLEKA NGVYTCEMNP MGVVQAGTFM 420 VSDAGYSSNF EVQADGYFQD SDLLSARYCL SPENGTTVDL LQLSTHLQRV ERQRNSVVKQ 480 ENEDLCYFLA T

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MDLPVDSYAR SRKALIGGWD LKPSTDFEAV ESMELMDFGF ADMNKRPFYG NTSMGIFGAE  60
FGNDSAKRVV SPTCMFTSSS YYGDEESGSK HSSSLMESNS QESSLIDLKL GRLADYRDAH  120
DGNFLKETSV VSSVRPALMA KKPRSSYSHT PCCQVYGCNK DLSSSKDYHK RHKVCEVHSK  180
TAKVIVNGIE QRFCQQCSRF HVLAEFDDGK RSCRKRLAGH NERRRKLHFN SLSGKRHKML  240
HSYQGTKFLG NSIPKRMPFV IPNMFQGDFV YEERNEQANQ FQLVKSEKKP ICSPQSAIPI  300
TNGQLGAKSF FHMHGSGKQC VPGTFSSPTE GFNAPNAAST VKDSSGVSRS GCALSLLSAQ  360
SQDLSSHATG IQMTRPLINQ AGRVYHSFEK SAGVSSLEKA NGVYTCEMNP MGVVQAGTFM  420
VSDAGYSSNF EVQADGYFQD SDLLSARYCL SPENGTTVDL LQLSTHLQRV ERQRNSVVKQ  480
ENEDLCYFLA T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-56	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO93523