PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93313
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 397aa    MW: 44387.2 Da    PI: 4.6271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93313genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-194998255
       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  OMO93313 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 98
              789******.7*********33....35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MGKRKVIASA EGEKGNNNVD HWEPNMVMDN AAAAAAIAAL GGARRARKRF VGVRQRPSGR  60
WVAEIKDTIQ KIRVWLGTYD TAEEAARAYD EAACLLRGAN TRTNFWPCSS HYNNSTPALP  120
SKIANLLLLR LQARNNNNLA AATSMASSSS NLAPNNNKGF QAAAAEGDEV CNIEDFFVNV  180
PNEDQDFSLN TSSSSSSEMD CGSSFAKQED VKIKKLGLEE EGIDDMGKLM DLQLEDALGL  240
PSYFSDPFQI AEEMVLENQP LMEQQETYGN YNYNEHDEDP SMLRETMKRM KFERNFSASL  300
YAFNGIPECL RLKQHDQSEN HIDKPPQQYS YLRNDINCSD PNFEKKFEIK EEHDEQVAMF  360
HAETGSSAHS SSISNIEAAH EIWGSLDLPP ICFVNQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-19ERF family protein