PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93222

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Dof

Protein Properties

Length: 435aa MW: 48144.4 Da PI: 7.011

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93222	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	134	194	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk k+s+ OMO93222 134 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGSGRRKTKSSN 194 7899*****************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MAAELSDSSA IKLFGKMIPL PTLNLEEEAL PDHDQLCFKE GSCDRNLVSS PDSLGGGNNS 60 DDEVQALAPM EDKENNSSDE IKEDHLKDPT SILSDITDNG GRSQRKTSSI QTSKNEDISE 120 TTSTQQDKIT LKKPDKILPC PRCNSKETKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN 180 VPVGSGRRKT KSSNSAAAIH YHHIVISEAI RAAAGMNKNH SSENNNSHVL TFGSSDSEYN 240 LSEKTQKNHS GETLEKEGKA ELKNNYPWFS SKVPCFSSRP AWPYPWESIP AMIPPPPAVL 300 SCHPGFPVTF HHGQPYLQGY SVPSPWNVCE NSPTTLGKHS RDDQNMKIPS PSANSEKENL 360 SKTMKIDDPG EAEKSSLLAS LVLQSKKTSN PGGLFEGFKS KTNDERSNYR LEAFSMLRAA 420 NPAALSRSLN FHENT

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MAAELSDSSA IKLFGKMIPL PTLNLEEEAL PDHDQLCFKE GSCDRNLVSS PDSLGGGNNS  60
DDEVQALAPM EDKENNSSDE IKEDHLKDPT SILSDITDNG GRSQRKTSSI QTSKNEDISE  120
TTSTQQDKIT LKKPDKILPC PRCNSKETKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN  180
VPVGSGRRKT KSSNSAAAIH YHHIVISEAI RAAAGMNKNH SSENNNSHVL TFGSSDSEYN  240
LSEKTQKNHS GETLEKEGKA ELKNNYPWFS SKVPCFSSRP AWPYPWESIP AMIPPPPAVL  300
SCHPGFPVTF HHGQPYLQGY SVPSPWNVCE NSPTTLGKHS RDDQNMKIPS PSANSEKENL  360
SKTMKIDDPG EAEKSSLLAS LVLQSKKTSN PGGLFEGFKS KTNDERSNYR LEAFSMLRAA  420
NPAALSRSLN FHENT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	5e-70	Dof family protein

Link Out ? help Back to Top
Ensembl	OMO93222