PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93217
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 360aa    MW: 40424.8 Da    PI: 6.7877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93217genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.9e-211053245
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              + en+  rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+tgk
  OMO93217 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIEIILLMFSPTGK 53
              6799**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IEIILLMFSP TGKPSLCSGK  60
RSVEEIIAKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NVNDFLGTST QTIEDMTNEA  120
RLLQTQLSEV HRRLSCWTNI DKNNNVEQLG QMEDTLKEYL NQIRAHKENL GKQQLLSLEC  180
TSQFQNEMHV PFRLGAEQQL QPLAWMPNND SRHIALPEDP NLIPHRDVEC SASSSFGSYS  240
GYFGTAKSSE LSSSGQENGI LNDLSGSAAL QLQLGGQYPF FSYNLNIVND TKFPPVAEMN  300
FPETPADYHV NGVLEGPRAG YDAAQGSWAS TSGPCAVTMF DEPLYSRAME NLVMVYYRIH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-104M-type_MADS family protein