PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO93191

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 34195.3 Da PI: 6.2423

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO93191	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	81	134	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k OMO93191 81 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134 456899***********************************************9 PP
2	HD-ZIP_I/II	131.4	3.5e-42	80	172	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k++n++L++++++L++e+++ OMO93191 80 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLHAEIMA 172 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MSCNGMAFFP ANFMLQTPHE DDHHQPPTSI NQLLPSCTPQ DFHGVASFLG KRSMSFSGID 60 VCEEGNGEDD LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR 120 QIAIWFQNRR ARWKTKQLEK DYDLLKRQYE AIKADNDALQ AQNQKLHAEI MALKSREPTE 180 SINLNIKETE GSCSNRSENS SDIKLDISRT PAIDSPLSTQ HPITSRTLFP TTSLRPTQSS 240 TPHVVAQQLF QNSSARSDNN HLQCQKMDQM VVKEESLTNM FCTIEDQSGF WPWLEQHNFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-125	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO93191