PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO92441

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARF

Protein Properties

Length: 1184aa MW: 129736 Da PI: 6.0407

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO92441	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73	3.6e-23	480	581	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l++ OMO92441 480 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLL 576 99***************************8544444..48********************************************..8899999 PP EEE-S CS B3 95 kvfrk 99 +++r+ OMO92441 577 GIRRA 581 **997 PP
2	Auxin_resp	117.6	1e-38	606	689	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k OMO92441 606 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 689 79******************************87599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1184 aa Download sequence
MANAKSDRRV VLLCGDYAED YEVMVPFQAL LAFGISVDAV CPGKKAGDVC RTAIQQPSVH 60 QTYSESRGHN FTLNASFDEI DHTQYHGLII PGGRAPEYLA MNASVVDLVR NFVDSGKPVA 120 AICHGQLILA AAGSVKGRKC TAHPAVGPAL IAAGALWAEP DSMAACVADG NIITGATYDG 180 HPEFIRLFLK ALGGNITTSN QRILFLCGDY MEDYEVTVPF QSLQALECHV DAVCPKKKAG 240 DTCPTAVHDF EGDQTYSEKP GHDFTLTANF EDIDASSYDA LVIPGGRAPE YLALDQTVIT 300 LVKKFMESKK PVASICHGQQ ILAAAGVLKG KKCTAYPAVK LNVVLAGATC LIDMKLSASG 360 LGQQGHEGEN KCLNSELWHA CAGPLVCLPT VGSRVVYFPQ GHSEQVAATT NKEVDAHIPN 420 YPNLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLTPEEQ KDTFLPMELG IPSKQPTNYF 480 CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDVEW KFRHIFRGQP 540 KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ATRPQTVMPS SVLSSDSMHI 600 GLLAAAAHAA ATNSCFTVFY NPRASPSEFV IPLSKYVKAV FHTRVSVGMR FRMLFETEES 660 SVRRYMGTIT GISDLDSVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS 720 LFPLRLKRPW HPGSSSLHDN RDDVANSLMW LRGGSGEQGL HSLNFQSFGT YPWVQQRLDL 780 SFPGNDHTLQ YQAMLSSGLQ NLGSGDPMRQ QLQQSFQYVQ QPGSHNLLLH MQQQASSQSV 840 PHNTLQAQSQ ILAENMPPVL GREQVGNQPE EQAQQQHNVI QSDQLQQRQP ANAPSSLLKT 900 DFIDSAKFPG TVSPAQNMLG SLCPETSVNL LNFSRTGQSM LAEQLPQQSW TPKYAHSQVN 960 AFASSRSLPQ VFPGKDAIVE PEIGNSNAQN SALFGGNNDS YGLLLPTTMP GFATSSSEAD 1020 VPSIPLGDPS FQNPLYGCMQ DSSELQSTGQ VDPPTPTQTF VKVYKSGSVG RSLDISRFSS 1080 YHELREELAQ MFGIEGKLED PLRSGWQLVF VDRENDILLL GDDPWEAFVN NVWYIKILSP 1140 EDVQKMGEQR VEPYSPSAGQ RINTAGTSGR DQVSGLSSVG SLEY

Sequence ? help Back to Top

Protein Sequence Length: 1184 aa Download sequence

MANAKSDRRV VLLCGDYAED YEVMVPFQAL LAFGISVDAV CPGKKAGDVC RTAIQQPSVH  60
QTYSESRGHN FTLNASFDEI DHTQYHGLII PGGRAPEYLA MNASVVDLVR NFVDSGKPVA  120
AICHGQLILA AAGSVKGRKC TAHPAVGPAL IAAGALWAEP DSMAACVADG NIITGATYDG  180
HPEFIRLFLK ALGGNITTSN QRILFLCGDY MEDYEVTVPF QSLQALECHV DAVCPKKKAG  240
DTCPTAVHDF EGDQTYSEKP GHDFTLTANF EDIDASSYDA LVIPGGRAPE YLALDQTVIT  300
LVKKFMESKK PVASICHGQQ ILAAAGVLKG KKCTAYPAVK LNVVLAGATC LIDMKLSASG  360
LGQQGHEGEN KCLNSELWHA CAGPLVCLPT VGSRVVYFPQ GHSEQVAATT NKEVDAHIPN  420
YPNLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLTPEEQ KDTFLPMELG IPSKQPTNYF  480
CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDVEW KFRHIFRGQP  540
KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ATRPQTVMPS SVLSSDSMHI  600
GLLAAAAHAA ATNSCFTVFY NPRASPSEFV IPLSKYVKAV FHTRVSVGMR FRMLFETEES  660
SVRRYMGTIT GISDLDSVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS  720
LFPLRLKRPW HPGSSSLHDN RDDVANSLMW LRGGSGEQGL HSLNFQSFGT YPWVQQRLDL  780
SFPGNDHTLQ YQAMLSSGLQ NLGSGDPMRQ QLQQSFQYVQ QPGSHNLLLH MQQQASSQSV  840
PHNTLQAQSQ ILAENMPPVL GREQVGNQPE EQAQQQHNVI QSDQLQQRQP ANAPSSLLKT  900
DFIDSAKFPG TVSPAQNMLG SLCPETSVNL LNFSRTGQSM LAEQLPQQSW TPKYAHSQVN  960
AFASSRSLPQ VFPGKDAIVE PEIGNSNAQN SALFGGNNDS YGLLLPTTMP GFATSSSEAD  1020
VPSIPLGDPS FQNPLYGCMQ DSSELQSTGQ VDPPTPTQTF VKVYKSGSVG RSLDISRFSS  1080
YHELREELAQ MFGIEGKLED PLRSGWQLVF VDRENDILLL GDDPWEAFVN NVWYIKILSP  1140
EDVQKMGEQR VEPYSPSAGQ RINTAGTSGR DQVSGLSSVG SLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OMO92441