PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91952
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GeBP
Protein Properties Length: 310aa    MW: 34212.5 Da    PI: 9.3219
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91952genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.91.1e-31121216297
    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
               lfqr++se+Dei lL+G+ d+ +++    ++  dafyef+ +si++ v+k q+v+K+rrL+kK+++   k+++gk+psfsk+hd+k ++lsk+iWg
  OMO91952 121 LFQRVFSESDEIDLLRGIKDYYDHESNGNKEMNDAFYEFIMGSIKVSVNKGQVVDKVRRLRKKYNNLAGKSNNGKDPSFSKDHDKKLYKLSKRIWG 216
               79*******************9998888888899*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MAAKAIKTPP PPPKDHESSS SNGEEDEEES KTGTQNTPPV VGVVGEEDKS GGGESDSESD  60
AGMAAKKSQG TMMISNSKAA QTPSAAAGKR GRESDLAVKK SKAKRAKGEE GEETALNKKT  120
LFQRVFSESD EIDLLRGIKD YYDHESNGNK EMNDAFYEFI MGSIKVSVNK GQVVDKVRRL  180
RKKYNNLAGK SNNGKDPSFS KDHDKKLYKL SKRIWGAKAK DNDEEDMAME DPKEKELILS  240
SDVVTGTATA MADFNRTEER VLKDCMARLT AEKRDKVEKK LKVIQLESYL KRSGVICKLV  300
ESTLRAYKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-22GeBP family protein