PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91858
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 348aa    MW: 37657.2 Da    PI: 6.8608
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91858genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17256289134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  OMO91858 256 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 289
               99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MIGPANFIDE IDCGSFFDHI DDLLDFPNED IEAGLSASDS GAAAFNSAAF PSIWNTHSES  60
LPGSDSVFSN NSASDLSAEL SVPYEDIVQL EWLSNFVEDS QCGASLTIKK EESFSINKDS  120
SHNQFQTSSP VSVLESSSSC SGDKTLPRSP ETAAAPGRRG RARSKRPRPA TFNPRPAIQL  180
ISPTSSVNEN DVPQSFAVPK APSDSENYAE SRLLIKLPRQ VNPEHKKKKK IKLSLPAAAA  240
PADSNQAPSG QAVRKCMHCE ITKTPQWRAG PMGPKTLCNA CGVRYKSGRL FPEYRPAASP  300
TFVPSLHSNS HKKVLEMRTK MGDPAPVTMI NNSPELIPNK SNPALDYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-43GATA family protein