PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO91239
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 921aa    MW: 102615 Da    PI: 10.2964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO91239genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07619640627
               -SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
               C+ f  tG C++G++Ck +H++
  OMO91239 619 CPSFEVTGSCPHGSKCKLHHPK 640
               *****************99985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    
MTSSTVITKP RTWHRTNDSS ASSAPLSANK PSFTAQTQMP RMAPAAATSY IRKGNTLVRK  60
PVSVPTLSQP QASVYRRDSR VVDELKTKKG AGPNSKADSV DLRTGDGNAP FERPATPPLF  120
SFPKVPNPTS NSSTLPVPSF SGFCETTTNH ATSMEVTDVI VNSPEDGLNA SRTPDSTGAD  180
QNESNLAPSS AKRVMYVKPK SNQLVATSDC GRACTLNNQP FSVSSDGYYK KRKNQLIRTA  240
LETHSNEAVN VSGGKRRSNK GQGLNEFVSF AVVVKAHKPS KFSLVWTLQS ARLSNNDGYS  300
LRHPKVLPHL FPWKRMTYWR SFKLNSVSSC NSSLSTISRK MLLLRKRNTV YTRSINGFSI  360
RKSKVLSVGG SSLKWSKSIE TLSRKANEEA TLAVAEAERK KRERNHTISG TGKRGYSFRE  420
RIFRIGSVRY KMDSSRRSLQ RISDDESSCS AGQPSENNVK IPRRLMIGND EYVRIGNGNQ  480
LVRNPKKRTR VLASEKVRWS LHTARLRLVK KKKYCQFFTR FGKCNKDDGK CPYIHDPSKI  540
AVCTKFLKGL CTNPNCELTH KVIPDRMPDC SYYLQGLCTN ENCPYRHVHV NPNASTCEGF  600
LKGYCADGNE CRKKHSYVCP SFEVTGSCPH GSKCKLHHPK KRSRTKKSKR SMEHKNAYGR  660
YFGIDILEPK RVVSETERHQ ALDDDDNFCN VKFSDYICLD VSDDEAGEVH RVINDQMAFG  720
DNDSSDIQLD DPDELIKPIR IMNRPSSPKA RRFSFTLIKM NVERLQKMAG AVRTGGKGSM  780
RRKKKAVHKT TTTDDKRLQS TLKRIGVNAI PAIEEVNIFK DDVVIQFLNP KVQASIAANT  840
WVVSGSPQTK KLQDILPGII NQLGPDNLDN LRKLAEQFQK QVPPAGAGAA TTQEEDDDDV  900
PELVPGETFE AAAEEEGQAA K