PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO91239

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 921aa MW: 102615 Da PI: 10.2964

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91239	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.3e-07	619	640	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f tG C++G++Ck +H++ OMO91239 619 CPSFEVTGSCPHGSKCKLHHPK 640 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence
MTSSTVITKP RTWHRTNDSS ASSAPLSANK PSFTAQTQMP RMAPAAATSY IRKGNTLVRK 60 PVSVPTLSQP QASVYRRDSR VVDELKTKKG AGPNSKADSV DLRTGDGNAP FERPATPPLF 120 SFPKVPNPTS NSSTLPVPSF SGFCETTTNH ATSMEVTDVI VNSPEDGLNA SRTPDSTGAD 180 QNESNLAPSS AKRVMYVKPK SNQLVATSDC GRACTLNNQP FSVSSDGYYK KRKNQLIRTA 240 LETHSNEAVN VSGGKRRSNK GQGLNEFVSF AVVVKAHKPS KFSLVWTLQS ARLSNNDGYS 300 LRHPKVLPHL FPWKRMTYWR SFKLNSVSSC NSSLSTISRK MLLLRKRNTV YTRSINGFSI 360 RKSKVLSVGG SSLKWSKSIE TLSRKANEEA TLAVAEAERK KRERNHTISG TGKRGYSFRE 420 RIFRIGSVRY KMDSSRRSLQ RISDDESSCS AGQPSENNVK IPRRLMIGND EYVRIGNGNQ 480 LVRNPKKRTR VLASEKVRWS LHTARLRLVK KKKYCQFFTR FGKCNKDDGK CPYIHDPSKI 540 AVCTKFLKGL CTNPNCELTH KVIPDRMPDC SYYLQGLCTN ENCPYRHVHV NPNASTCEGF 600 LKGYCADGNE CRKKHSYVCP SFEVTGSCPH GSKCKLHHPK KRSRTKKSKR SMEHKNAYGR 660 YFGIDILEPK RVVSETERHQ ALDDDDNFCN VKFSDYICLD VSDDEAGEVH RVINDQMAFG 720 DNDSSDIQLD DPDELIKPIR IMNRPSSPKA RRFSFTLIKM NVERLQKMAG AVRTGGKGSM 780 RRKKKAVHKT TTTDDKRLQS TLKRIGVNAI PAIEEVNIFK DDVVIQFLNP KVQASIAANT 840 WVVSGSPQTK KLQDILPGII NQLGPDNLDN LRKLAEQFQK QVPPAGAGAA TTQEEDDDDV 900 PELVPGETFE AAAEEEGQAA K

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence

MTSSTVITKP RTWHRTNDSS ASSAPLSANK PSFTAQTQMP RMAPAAATSY IRKGNTLVRK  60
PVSVPTLSQP QASVYRRDSR VVDELKTKKG AGPNSKADSV DLRTGDGNAP FERPATPPLF  120
SFPKVPNPTS NSSTLPVPSF SGFCETTTNH ATSMEVTDVI VNSPEDGLNA SRTPDSTGAD  180
QNESNLAPSS AKRVMYVKPK SNQLVATSDC GRACTLNNQP FSVSSDGYYK KRKNQLIRTA  240
LETHSNEAVN VSGGKRRSNK GQGLNEFVSF AVVVKAHKPS KFSLVWTLQS ARLSNNDGYS  300
LRHPKVLPHL FPWKRMTYWR SFKLNSVSSC NSSLSTISRK MLLLRKRNTV YTRSINGFSI  360
RKSKVLSVGG SSLKWSKSIE TLSRKANEEA TLAVAEAERK KRERNHTISG TGKRGYSFRE  420
RIFRIGSVRY KMDSSRRSLQ RISDDESSCS AGQPSENNVK IPRRLMIGND EYVRIGNGNQ  480
LVRNPKKRTR VLASEKVRWS LHTARLRLVK KKKYCQFFTR FGKCNKDDGK CPYIHDPSKI  540
AVCTKFLKGL CTNPNCELTH KVIPDRMPDC SYYLQGLCTN ENCPYRHVHV NPNASTCEGF  600
LKGYCADGNE CRKKHSYVCP SFEVTGSCPH GSKCKLHHPK KRSRTKKSKR SMEHKNAYGR  660
YFGIDILEPK RVVSETERHQ ALDDDDNFCN VKFSDYICLD VSDDEAGEVH RVINDQMAFG  720
DNDSSDIQLD DPDELIKPIR IMNRPSSPKA RRFSFTLIKM NVERLQKMAG AVRTGGKGSM  780
RRKKKAVHKT TTTDDKRLQS TLKRIGVNAI PAIEEVNIFK DDVVIQFLNP KVQASIAANT  840
WVVSGSPQTK KLQDILPGII NQLGPDNLDN LRKLAEQFQK QVPPAGAGAA TTQEEDDDDV  900
PELVPGETFE AAAEEEGQAA K

Link Out ? help Back to Top
Ensembl	OMO91239