PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO90800

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARF

Protein Properties

Length: 1110aa MW: 122757 Da PI: 6.3035

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO90800	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.7e-22	141	242	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+++ OMO90800 141 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLLLG 238 99***************************9445444.38********************************************..5688889* PP EE-S CS B3 96 vfrk 99 ++r+ OMO90800 239 IRRA 242 *997 PP
2	Auxin_resp	121.1	8.4e-40	267	350	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++gvsdldpvrW+nS+Wr+L+ OMO90800 267 AAHAVANNSPFTVFYNPRASPSEFVIPLAKYYKAVYnNQISPGMRFRMMFETEESGTRRYMGTITGVSDLDPVRWKNSQWRNLQ 350 79******************************98799*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence
MKMPANGAAA VASNAAAAAL NPDEGGGAPE KKSINPELWQ ACAGPLVNLP VAGTHVVYFP 60 QGHSEQVAAS MKKDVDAQIP NYPNLPSKLL CLLHNVTLHA DPESDEVYAQ MTLQPVSSFD 120 KEALLRSDLS LKENKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE 180 LVARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR 240 RANRQPTNLS SSVLSSDSMH IGILAAAAHA VANNSPFTVF YNPRASPSEF VIPLAKYYKA 300 VYNNQISPGM RFRMMFETEE SGTRRYMGTI TGVSDLDPVR WKNSQWRNLQ VGWDESTAGE 360 RRNRVSIWEI EPVTAPFFIC PPPFFRSKRP RQPGMPDNES SDLDNLFKRS MPWLGDDICM 420 KDSQALSGLS LVQWMNMQQN PALANSMQPN FMHPSSNSIM QNFGVADLSR QMGLSAPQMP 480 QPNNLQFNTQ RLPQHDQLPK ISSTTNSLGS VMQPQQLSDM TQQSRQNFSA QSLPSTQVQA 540 QVLQPPIVVQ SDNILQQQQL PTQTHQLPVS LPQSLMQQQQ QQHLLGPNPQ QNLVQPSLLD 600 PLNQHLQMPD NQIQFQLLQK LQLQQQALLA QQSALQQPAQ LAQTQDRQLL DVSQSFSRSM 660 TTSQVLGMPQ MTSMLPQSNV IPQQMPKSNS QDNARLSQSP LQSKLQQQQL GMLPKIADQM 720 GPSLTPTGNQ PSTAISSVMT GAIVGAHSVI TDDNPSCSTS PSTNANVLQP MINNNMVQRS 780 ARLGDDMAQS AATVLNPNAL ETMSSNANMI KELQQKSDVK PLSNIPKSQN RDLFARQGYI 840 NGAAAQTDYL DTSSSTTSVC VSQNDAHLQQ NNSLTYNPQT MLVTDTNQDV EIQVDPRNNV 900 SYDTNIDGQI GMPVNPDSLL TKGVMGLGKD FSNNLSSSGV LTNYENPKDI QQEQSSSMVS 960 QSFGVPDMTF NSIDSSINDS SFINRGAWAP PPQFQRMRTY TKVYKRGAVG RSIDITRYSG 1020 YDELKQDLAR RFGIEGQLED RGRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP 1080 QEVQQMSLDG DFGNSVLPNH ACSSSDNGNA

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence

MKMPANGAAA VASNAAAAAL NPDEGGGAPE KKSINPELWQ ACAGPLVNLP VAGTHVVYFP  60
QGHSEQVAAS MKKDVDAQIP NYPNLPSKLL CLLHNVTLHA DPESDEVYAQ MTLQPVSSFD  120
KEALLRSDLS LKENKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE  180
LVARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR  240
RANRQPTNLS SSVLSSDSMH IGILAAAAHA VANNSPFTVF YNPRASPSEF VIPLAKYYKA  300
VYNNQISPGM RFRMMFETEE SGTRRYMGTI TGVSDLDPVR WKNSQWRNLQ VGWDESTAGE  360
RRNRVSIWEI EPVTAPFFIC PPPFFRSKRP RQPGMPDNES SDLDNLFKRS MPWLGDDICM  420
KDSQALSGLS LVQWMNMQQN PALANSMQPN FMHPSSNSIM QNFGVADLSR QMGLSAPQMP  480
QPNNLQFNTQ RLPQHDQLPK ISSTTNSLGS VMQPQQLSDM TQQSRQNFSA QSLPSTQVQA  540
QVLQPPIVVQ SDNILQQQQL PTQTHQLPVS LPQSLMQQQQ QQHLLGPNPQ QNLVQPSLLD  600
PLNQHLQMPD NQIQFQLLQK LQLQQQALLA QQSALQQPAQ LAQTQDRQLL DVSQSFSRSM  660
TTSQVLGMPQ MTSMLPQSNV IPQQMPKSNS QDNARLSQSP LQSKLQQQQL GMLPKIADQM  720
GPSLTPTGNQ PSTAISSVMT GAIVGAHSVI TDDNPSCSTS PSTNANVLQP MINNNMVQRS  780
ARLGDDMAQS AATVLNPNAL ETMSSNANMI KELQQKSDVK PLSNIPKSQN RDLFARQGYI  840
NGAAAQTDYL DTSSSTTSVC VSQNDAHLQQ NNSLTYNPQT MLVTDTNQDV EIQVDPRNNV  900
SYDTNIDGQI GMPVNPDSLL TKGVMGLGKD FSNNLSSSGV LTNYENPKDI QQEQSSSMVS  960
QSFGVPDMTF NSIDSSINDS SFINRGAWAP PPQFQRMRTY TKVYKRGAVG RSIDITRYSG  1020
YDELKQDLAR RFGIEGQLED RGRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP  1080
QEVQQMSLDG DFGNSVLPNH ACSSSDNGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OMO90800