PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO90350
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 269aa    MW: 29126.7 Da    PI: 9.8646
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO90350genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.13.2e-3159113358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +vrY+eClkNhAa++Gg+a+DGCgEfmps geegt +alkC+AC+CHRnFHR+e +
     OMO90350  59 AVRYRECLKNHAAAIGGNATDGCGEFMPS-GEEGTLEALKCSACNCHRNFHRKEIQ 113
                  79**************************9.999********************976 PP
2Homeobox14.75.4e-05197253153
               TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
               +r Rt+f++eq e + ++ e    + ++++++  ++  +++g++ r+ kvW +N ++
  OMO90350 197 KRFRTKFSQEQKEKMLKFAEkaewRIQKLDESVVQHFCQEIGIKRRVLKVWMHNNKQ 253
               789************987776666689***************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MNNSSRSPRR NNNGGNGNGH SINVVSSGVS GPPSPSLEEN NNNNGNDSIG RPSNFKKVAV  60
RYRECLKNHA AAIGGNATDG CGEFMPSGEE GTLEALKCSA CNCHRNFHRK EIQCDCPFPF  120
DCYHNSAIIN SGRKLILGPS QNYILASPAA AVTAAAPLMT SFKAGSSVPS ETDEKDDNGG  180
GGRVAAAKGS GGGKVRKRFR TKFSQEQKEK MLKFAEKAEW RIQKLDESVV QHFCQEIGIK  240
RRVLKVWMHN NKQSLAKKLD HINVPGLSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-58ZF-HD family protein