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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO89864 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | LBD | ||||||||
| Protein Properties | Length: 108aa MW: 12320.2 Da PI: 7.1301 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 28.5 | 4.3e-09 | 50 | 77 | 54 | 81 |
DUF260 54 redamsslvyeAearardPvyGavgvil 81
++a++sl++eA++r++dPvyG+v+v+
OMO89864 50 LKEAVESLYFEAQCRIEDPVYGCVKVFD 77
589*********************9975 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 108 aa Download sequence |
MASASSTNKI INDNSQSIIE LKQWSRCILK HNVESKTLFM AANPQSIIEL KEAVESLYFE 60 AQCRIEDPVY GCVKVFDRFG YLNVREEEIN LLASIRGCGL NPFKSFRI |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G26660.1 | 2e-08 | LBD family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO89864 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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