PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89766

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 402aa MW: 45459.4 Da PI: 4.8476

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89766	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.9	2.3e-09	6	49	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v OMO89766 6 ARACDGCLRKRARWYCLADDAFLCQACDTSVHSAnqlasrHERV 49 578*****************************667888888876 PP
2	CCT	68.3	2.1e-23	343	386	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OMO89766 343 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 386 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MGGKTARACD GCLRKRARWY CLADDAFLCQ ACDTSVHSAN QLASRHERVR LETSSSSKFH 60 GNNIDAPPAW HQGFTRKART PRHNNKSKAE GTKLLNSNPF DPLVPELGSE DGSVDETEEQ 120 LLCRVPVFDP FDAELCHMPS HSDGDEVAML NEVDDGLHGL LPSDIDLAEF AADVESLLGL 180 DEEDDIKGIE LLDSKQQFDD TTTTTNFCEQ FDDTTCFYEH QMVKVKDEED VEGLTSALNW 240 SFDYESPLFD DDEEEKLSVA AAAEMEIKNE ESKAEMKRKM LLSLNYESVI TAWASHGSPW 300 TTGSRPEFNP DDFMGSNAKE GHYMNGGLYS QLHQARGNTD GEREARVSRY REKRRTRLFS 360 KKIRYEVRKL NAEKRPRMKG RFVKRTSSSF MGSTANFPYS IQ

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MGGKTARACD GCLRKRARWY CLADDAFLCQ ACDTSVHSAN QLASRHERVR LETSSSSKFH  60
GNNIDAPPAW HQGFTRKART PRHNNKSKAE GTKLLNSNPF DPLVPELGSE DGSVDETEEQ  120
LLCRVPVFDP FDAELCHMPS HSDGDEVAML NEVDDGLHGL LPSDIDLAEF AADVESLLGL  180
DEEDDIKGIE LLDSKQQFDD TTTTTNFCEQ FDDTTCFYEH QMVKVKDEED VEGLTSALNW  240
SFDYESPLFD DDEEEKLSVA AAAEMEIKNE ESKAEMKRKM LLSLNYESVI TAWASHGSPW  300
TTGSRPEFNP DDFMGSNAKE GHYMNGGLYS QLHQARGNTD GEREARVSRY REKRRTRLFS  360
KKIRYEVRKL NAEKRPRMKG RFVKRTSSSF MGSTANFPYS IQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	370	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-97	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO89766