PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO89605
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 727aa    MW: 78722 Da    PI: 6.209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO89605genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C++f++ G C++Gd C +aHg
  OMO89605 306 PCPDFRK-GACRRGDMCEYAHG 326
               8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MCCGSERLKQ TPAPTTSNIS FEDNRHPSLD MNHLTIETED TFASLLELAA NNDVEGFRRS  60
IERDPSGIDE AGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVVKLILSS SDADVNRVCG  120
HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANIVDANGH LPVDVIVVPP KLQAVKSTLE  180
ELLATETSVL ERNLRVSTAV ANSNSPPLSP SQENGSPSSG SDSPMKSKST DAPISSASEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTPE  360
ELRPLYVSTG SAVPSPRSST SGATAMDFAA ALSLLPGSPS SVSVMSPSPF TPPMSPSANG  420
MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAD DFNMLPDFDV QQQQLMNELS  480
SLTQPSMSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQALAAAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTNFSPKTM EHPLLQASLS GRMSPRNVEP ISPMGSRVSM LAQREKQQQF  600
RSLSSRELGS GSAAIVGSPV NSWSKWGSSN GKPDWAVNAD ELGKLRRSSS FELGNGEEPD  660
LSWVQSLVKE SPTEIKEKMG VSVSGVAPNA STGEGSNMNS QIDSVDHAVL GAWLEQMQLD  720
QLVAQQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein