PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO89605 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 727aa MW: 78722 Da PI: 6.209 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OMO89605 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence |
MCCGSERLKQ TPAPTTSNIS FEDNRHPSLD MNHLTIETED TFASLLELAA NNDVEGFRRS 60 IERDPSGIDE AGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVVKLILSS SDADVNRVCG 120 HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANIVDANGH LPVDVIVVPP KLQAVKSTLE 180 ELLATETSVL ERNLRVSTAV ANSNSPPLSP SQENGSPSSG SDSPMKSKST DAPISSASEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTPE 360 ELRPLYVSTG SAVPSPRSST SGATAMDFAA ALSLLPGSPS SVSVMSPSPF TPPMSPSANG 420 MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPAD DFNMLPDFDV QQQQLMNELS 480 SLTQPSMSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQALAAAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTNFSPKTM EHPLLQASLS GRMSPRNVEP ISPMGSRVSM LAQREKQQQF 600 RSLSSRELGS GSAAIVGSPV NSWSKWGSSN GKPDWAVNAD ELGKLRRSSS FELGNGEEPD 660 LSWVQSLVKE SPTEIKEKMG VSVSGVAPNA STGEGSNMNS QIDSVDHAVL GAWLEQMQLD 720 QLVAQQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO89605 |