PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89502

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CPP

Protein Properties

Length: 555aa MW: 60672.4 Da PI: 7.8221

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89502	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.7	7.4e-16	148	186	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag +C++ C+C++C+N+ e OMO89502 148 CKRCNCKKSKCLKLYCDCFAAGIYCADPCSCQGCFNRPE 186 89**********************************876 PP
2	TCR	49.5	8.4e-16	234	272	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs C+Ce+CkN OMO89502 234 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 272 589***********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
GYCEKPSLTV SKPSGIGLHL NSIVNALPIG RGATACMKLS VDSMGINEIK SASLMSCRLM 60 ENKESCSDAF EKVLVAPEDG TLEAKACKVA SSAASESHCT VESLDRQITL YTKREPSSEH 120 GENNEMLNQE SPKKKRQKSS NSTDSEGCKR CNCKKSKCLK LYCDCFAAGI YCADPCSCQG 180 CFNRPEYEDT VLETRQQIES RNPLAFAPKI VQPVNEFQVN NREDGNGKTP SSARHKRGCN 240 CKRSMCLKKY CECYQANVGC SIGCRCEGCK NVFGKKEDFC LTEEMLNRGG MEISESTVAA 300 KKDILHSEFN PHLTPLTPSF QYSDHGKNAP KPRLLTVKSL PSPESDLLVL SYAKSPRTSD 360 SNDMIQETSK ENLDVGSYSE GINYKNVDML VDECHQTPLP YHPSIIRGSS SSKARELSSL 420 SRFQLGPKSG LSSGGSFCWR SSPITPMSSL DETKNLQGLD CDGGLYDILE DDTPELLKET 480 STPTKPVKVS SPNGKRVSPP HKLQQLGSSS SGPLRSGRKF ILRAVPSFPP LTPCIDSKGS 540 SNQNRSNFQE NSSTD

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

GYCEKPSLTV SKPSGIGLHL NSIVNALPIG RGATACMKLS VDSMGINEIK SASLMSCRLM  60
ENKESCSDAF EKVLVAPEDG TLEAKACKVA SSAASESHCT VESLDRQITL YTKREPSSEH  120
GENNEMLNQE SPKKKRQKSS NSTDSEGCKR CNCKKSKCLK LYCDCFAAGI YCADPCSCQG  180
CFNRPEYEDT VLETRQQIES RNPLAFAPKI VQPVNEFQVN NREDGNGKTP SSARHKRGCN  240
CKRSMCLKKY CECYQANVGC SIGCRCEGCK NVFGKKEDFC LTEEMLNRGG MEISESTVAA  300
KKDILHSEFN PHLTPLTPSF QYSDHGKNAP KPRLLTVKSL PSPESDLLVL SYAKSPRTSD  360
SNDMIQETSK ENLDVGSYSE GINYKNVDML VDECHQTPLP YHPSIIRGSS SSKARELSSL  420
SRFQLGPKSG LSSGGSFCWR SSPITPMSSL DETKNLQGLD CDGGLYDILE DDTPELLKET  480
STPTKPVKVS SPNGKRVSPP HKLQQLGSSS SGPLRSGRKF ILRAVPSFPP LTPCIDSKGS  540
SNQNRSNFQE NSSTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	7e-66	CPP family protein

Link Out ? help Back to Top
Ensembl	OMO89502