PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88783

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 359aa MW: 39414.9 Da PI: 5.2178

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88783	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.8	6.3e-28	50	144	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s +++ ++l+ OMO88783 50 RWTRQEILVLIQGKRVAESRVRRGRaaglafgsaQVEPKWASVSSYCEKHGVNRGPVQCRKRWSNLAGDFKKIKEWENNIRDETESFWVMRNDLR 144 8********************866677777779******************************************99999999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MALEQLSLAA TPDPVDGRSG AVNAATNGVE SRPASVDGGD DVSKTPRLPR WTRQEILVLI 60 QGKRVAESRV RRGRAAGLAF GSAQVEPKWA SVSSYCEKHG VNRGPVQCRK RWSNLAGDFK 120 KIKEWENNIR DETESFWVMR NDLRRERKLP GFFDKEVYDI LDGGATGVQS PETVPGLSLA 180 LAPTPVVQDV AEDAETVFDS GRSAAAEDGL FSDFEQDDAT GSPEKMEPAM VAATGKTVPA 240 PMPISEKQYQ PQPQPTPRGN QTQGTTNEKH PTSNPEIGSA SQEARKRKRM GNDGDEEMNS 300 LQYHLIDVLE RNGKMLVAQL EAQNTNFQQD REQRRDHADN LVAVLNKLAD ALGRIADKL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MALEQLSLAA TPDPVDGRSG AVNAATNGVE SRPASVDGGD DVSKTPRLPR WTRQEILVLI  60
QGKRVAESRV RRGRAAGLAF GSAQVEPKWA SVSSYCEKHG VNRGPVQCRK RWSNLAGDFK  120
KIKEWENNIR DETESFWVMR NDLRRERKLP GFFDKEVYDI LDGGATGVQS PETVPGLSLA  180
LAPTPVVQDV AEDAETVFDS GRSAAAEDGL FSDFEQDDAT GSPEKMEPAM VAATGKTVPA  240
PMPISEKQYQ PQPQPTPRGN QTQGTTNEKH PTSNPEIGSA SQEARKRKRM GNDGDEEMNS  300
LQYHLIDVLE RNGKMLVAQL EAQNTNFQQD REQRRDHADN LVAVLNKLAD ALGRIADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-123	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO88783