PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO88346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 201aa    MW: 22469.6 Da    PI: 8.5691
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO88346genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26070.14.7e-221362150
    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50
              +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l+  +
  OMO88346 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQCRE 62
              7*********************************************9854 PP

2DUF26060.45e-198413747100
    DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               k+lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la +++e
  OMO88346  84 KELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAE 137
               6789*********************************************99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MKESGRKHGT LSPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQC  60
REKYPPISTC LLQGREKKQI MSDKELPEHQ RSDAVSSMVY EANARVRDPV YGCVGAISSL  120
QQQIDSLQTQ LAIAQAEVVH MRMRQFVSTS PNNNNNNPDS SSPQNLPHGS ASSKFMPSQA  180
KSFYCMDMVD QPNMAESLWS Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-59LBD family protein