PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87591
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 86aa    MW: 9741.86 Da    PI: 7.5053
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87591genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-081558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a + + ++   +W ++a  +g  ++++++k ++
         OMO87591 15 YWTAKQNKLFEKALAVYDKDtpdRWQKVADAVG-DKSAEEVKRHY 58
                     5********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    
MASSSMTYSR DSNSYWTAKQ NKLFEKALAV YDKDTPDRWQ KVADAVGDKS AEEVKRHYEI  60
LVADLMYIES GQIAIPNYKS TGGSRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-34MYB_related family protein