PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87521

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 379aa MW: 42454.8 Da PI: 5.4509

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87521	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.3	7e-10	299	336	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+++qV++WF N R + OMO87521 299 FEHflHPYPTDSEKLMLASQTGLSKNQVSNWFINARVR 336 564459******************************88 PP
2	BELL	103.7	1.3e-33	162	232	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++elq++ akL+ lleeV+ rY++y++q++ v+ssFea ag+g+ak Yt+lAl+a+SrhF +L+dai+ qi OMO87521 162 KNELQIRLAKLIGLLEEVEVRYEKYYQQMEEVVSSFEALAGIGAAKCYTALALQAMSRHFCSLRDAIITQI 232 689******************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDLLPAPIVT EESEISQTRH LMDLLGAANE TNRHAQRLSL SLGSHMFAPN SLNSNMASSS 60 YLIPAEEDRQ VCNPAGVSDD YSFTGSPFAS SSSTSLHRSF ANSIGNSRYL RPTQSLLDEA 120 VNVGGSNVED HFFGKLYLGG VSRLSSELKA EFCSNEISLS DKNELQIRLA KLIGLLEEVE 180 VRYEKYYQQM EEVVSSFEAL AGIGAAKCYT ALALQAMSRH FCSLRDAIIT QINVIRRKFS 240 HDLPKINRGL SQLSLFDRDS RQNRLSLQQL GMIPSQRQAW RPIRGLPETS VAILRSWLFE 300 HFLHPYPTDS EKLMLASQTG LSKNQVSNWF INARVRLWKP MIEEMYKEEF ADSPQDSESD 360 PSLACTSMGR ESIADQAED

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDLLPAPIVT EESEISQTRH LMDLLGAANE TNRHAQRLSL SLGSHMFAPN SLNSNMASSS  60
YLIPAEEDRQ VCNPAGVSDD YSFTGSPFAS SSSTSLHRSF ANSIGNSRYL RPTQSLLDEA  120
VNVGGSNVED HFFGKLYLGG VSRLSSELKA EFCSNEISLS DKNELQIRLA KLIGLLEEVE  180
VRYEKYYQQM EEVVSSFEAL AGIGAAKCYT ALALQAMSRH FCSLRDAIIT QINVIRRKFS  240
HDLPKINRGL SQLSLFDRDS RQNRLSLQQL GMIPSQRQAW RPIRGLPETS VAILRSWLFE  300
HFLHPYPTDS EKLMLASQTG LSKNQVSNWF INARVRLWKP MIEEMYKEEF ADSPQDSESD  360
PSLACTSMGR ESIADQAED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75430.1	1e-102	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO87521