PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO87490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26972.9 Da PI: 9.8014 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n +nrqvt+skRrng++KKA+EL vLCda+v++i+fs++gkl+e++s OMO87490 9 KPIDNPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSQSGKLHEFIS 59 68***********************************************86 PP | |||||||
2 | K-box | 95.5 | 8.6e-32 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+ g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L++Ls++eLq Leq+++++ k iR++K++ + +qi++++kk ++++e++k L ++l+ OMO87490 71 YQKTLGVDLWQSQYEKMQEQLRKLKDVNRNLRKEIRQRMGDCLNELSFEELQGLEQEMDNAAKLIRERKYKSIGNQIDTSRKKCRNVEEIHKGLLHELD 169 7899999***************************************************************************************99886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MARGKIQIKP IDNPTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFSQ SGKLHEFISP 60 STTTKEIIDL YQKTLGVDLW QSQYEKMQEQ LRKLKDVNRN LRKEIRQRMG DCLNELSFEE 120 LQGLEQEMDN AAKLIRERKY KSIGNQIDTS RKKCRNVEEI HKGLLHELDA IKEDPYGLVD 180 NGGDYDAIIG YQHGGPRIFA LRLQPTHSTV NPITPRRNPQ LPSPEEFPKI ARAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO87490 |