PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87407

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 420aa MW: 45854 Da PI: 9.7043

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87407	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	179	200	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H OMO87407 179 CQQCGEVFPKIESLELHQAVrH 200 ******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MALLTFLPEA AAAVEPKKQP STKRRKKQTK EKQPSSWDQI KNLLTCKQIE GSKVHDPSKS 60 NLPQHHGYSK LGSSCNSICS FRDVVHGNTR VVHRADNSPE SSTVGQETGL LRRKPVNGST 120 STRSLSGSTR SNHSTATSTY PTSSSSRAMQ FRKLSGCYEC HMIVDPSRFP SSRTTISACQ 180 QCGEVFPKIE SLELHQAVRH AVSELGPEDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH 240 NTQRTIQRFE DCRDAVKTRA LNSTKKNPRC AADGNELLRF HCTTLTCSLG ARGSSNLCSS 300 VPGCGVCTVI RQGFQNKGGA VAAAEFKGVR TTASSGRAHD SLKCTDGRRA MLVCRVIAGR 360 VKRVTDDAPL EEDNSSNVSA GSYDSVAAYA GVYSNLEELV VFNPRAILPC FVVIYKALES

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MALLTFLPEA AAAVEPKKQP STKRRKKQTK EKQPSSWDQI KNLLTCKQIE GSKVHDPSKS  60
NLPQHHGYSK LGSSCNSICS FRDVVHGNTR VVHRADNSPE SSTVGQETGL LRRKPVNGST  120
STRSLSGSTR SNHSTATSTY PTSSSSRAMQ FRKLSGCYEC HMIVDPSRFP SSRTTISACQ  180
QCGEVFPKIE SLELHQAVRH AVSELGPEDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH  240
NTQRTIQRFE DCRDAVKTRA LNSTKKNPRC AADGNELLRF HCTTLTCSLG ARGSSNLCSS  300
VPGCGVCTVI RQGFQNKGGA VAAAEFKGVR TTASSGRAHD SLKCTDGRRA MLVCRVIAGR  360
VKRVTDDAPL EEDNSSNVSA GSYDSVAAYA GVYSNLEELV VFNPRAILPC FVVIYKALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO87407