PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87158

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 836aa MW: 95704.5 Da PI: 8.5712

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87158	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	160	252	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YA+ +GFs rk +s+ k+++e+++++f C++ g r + k t+k+r++++ +r++C a+++v++++ +g w+vt ++ HnH+la OMO87158 160 DFYRAYAHVIGFSARKGSSRVDKDSREVVMKEFSCNRAGARLAKWMKrcTDKRRQPKPLSRCNCPAHMRVTLDQnSGLWQVTLFKDGHNHKLA 252 6**************************************9988777899******************99**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MRVAAAKLGS MRESKLRKRK QKAESRRKRR QPYERRNFVH RRKESFVQGN IVMEDEQGNI 60 VIEEAEVNGM SPIELNSDNS NEVQLESAET ERSIECGEAG TSVGGSENGL DKSDVDVYET 120 TPEWEDVIGL NGFLIGKDPK KLSREDFENL QFKSSDEAYD FYRAYAHVIG FSARKGSSRV 180 DKDSREVVMK EFSCNRAGAR LAKWMKRCTD KRRQPKPLSR CNCPAHMRVT LDQNSGLWQV 240 TLFKDGHNHK LAKESQKFMV RSNREVCSGA AEFARALKKG GSRPCEIMNY LAQEAGGYQN 300 VGFTKKDLCN KLYRDSRNNV KELGDVKSAL CYLEKRANRG GLCVGLQQFL RCMSDKRPIS 360 IVTDGAQAMA NALKVVMLEA NHRLCVWHIH RNAKRHLPTA DAIDKFKRCM LAWWKADDFE 420 RGWKELVEMN GMRNNSWVVQ MYRIKEYWAQ AFITGKFFAG MKTSSRCEGY NSYLKRFIRR 480 EGTMVEFMQS IENAVKTMCE IETEEDYYSR QTKPLSMSEM KALEDYAGHV FTRKSFGRFR 540 KELRREATYY SASAPAVMST RIKVYRILKY LEPNNEREVS YDPENGSIKC DCMLLETDGI 600 PCRHAIHVMK VENLRSIPKR CIKKRWTKNA KDLSDEEEAF ASVDEKAIEA LRRSSLQMML 660 STICYMGSKS KKAFLEAREK ISRLIESMGV ESKNAKREDA PSTEDGPEGL TQEQAEPEGH 720 PDQKKRREYK CSFCRKVGHK KPSCPMLEIR TAQPVELGMM RSSDSDSEYN TSDDELCRNG 780 RSWADCRDYM DEEAVLSDPE EEVEGSRSPS DTDNSVAQGV AEADHSLHAA ATVRVQ

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MRVAAAKLGS MRESKLRKRK QKAESRRKRR QPYERRNFVH RRKESFVQGN IVMEDEQGNI  60
VIEEAEVNGM SPIELNSDNS NEVQLESAET ERSIECGEAG TSVGGSENGL DKSDVDVYET  120
TPEWEDVIGL NGFLIGKDPK KLSREDFENL QFKSSDEAYD FYRAYAHVIG FSARKGSSRV  180
DKDSREVVMK EFSCNRAGAR LAKWMKRCTD KRRQPKPLSR CNCPAHMRVT LDQNSGLWQV  240
TLFKDGHNHK LAKESQKFMV RSNREVCSGA AEFARALKKG GSRPCEIMNY LAQEAGGYQN  300
VGFTKKDLCN KLYRDSRNNV KELGDVKSAL CYLEKRANRG GLCVGLQQFL RCMSDKRPIS  360
IVTDGAQAMA NALKVVMLEA NHRLCVWHIH RNAKRHLPTA DAIDKFKRCM LAWWKADDFE  420
RGWKELVEMN GMRNNSWVVQ MYRIKEYWAQ AFITGKFFAG MKTSSRCEGY NSYLKRFIRR  480
EGTMVEFMQS IENAVKTMCE IETEEDYYSR QTKPLSMSEM KALEDYAGHV FTRKSFGRFR  540
KELRREATYY SASAPAVMST RIKVYRILKY LEPNNEREVS YDPENGSIKC DCMLLETDGI  600
PCRHAIHVMK VENLRSIPKR CIKKRWTKNA KDLSDEEEAF ASVDEKAIEA LRRSSLQMML  660
STICYMGSKS KKAFLEAREK ISRLIESMGV ESKNAKREDA PSTEDGPEGL TQEQAEPEGH  720
PDQKKRREYK CSFCRKVGHK KPSCPMLEIR TAQPVELGMM RSSDSDSEYN TSDDELCRNG  780
RSWADCRDYM DEEAVLSDPE EEVEGSRSPS DTDNSVAQGV AEADHSLHAA ATVRVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	28	RKRKQKAESRRK
2	17	31	RKRKQKAESRRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-39	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO87158