PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO87074

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 270aa MW: 29132.2 Da PI: 5.8973

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO87074	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H OMO87074 105 FSCNYCQRKFFSSQALGGHQNAH 127 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MMKPVIDLEV EASENESEVS SQVASNLSIQ ETSIAAPSND STCLATQSNS EPLSLDLTLH 60 FSIDESSSGG GSGRDSSAVV SLSSTSESSN DPSLRATASA IPRVFSCNYC QRKFFSSQAL 120 GGHQNAHKRE RTLAKRAMRM GILSERYSAS LATLPLHGTS FRSLGIKAHS SAHQSFAPPP 180 IRPADSRNNN ARFEHGYLGL PIFIEDDEAE MLWPGSFRQI NEANEAHHHH HPGFLLPGSS 240 NSNTINFVDV STQPVDLESS AVQPDLTLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	6e-51	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO87074