PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86726
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 385aa    MW: 45235 Da    PI: 7.8032
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86726genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS781.6e-2473112325
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lLl+c +a+++g+lel +alL+r+ +la+++ +   R+++y++e++ +r ++        l+ps       s   +++ +++  sP+ k+   + N   
  OMO86726   7 KKLLLDCGRALEDGNLELLNALLERIFTLAAKYNR--GRMVKYYAEGIVRRAYE--------LHPSLPY--FYSLLPFYYYFYYYSSPLNKIKPNVLNG-- 93 
               689**************************999875..6***************9........5555554..233444566779999********99998.. PP

      GRAS 103 leavegeervHiiDfdisqGlQWp..aLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe.fnvlvakrledlele...eL. 194
                   +++++vH iDf + +  +     L++ + +    + +  +R+ +v +p  +    + + ++ La+ Aee++++f+  ++++a++l +++++   +L 
  OMO86726  94 ----KKQKQVHLIDFYLPHLYHRNrgYLFDGMRKLVcgDTTVCVRVSVVLPPFLKGIVDVGREEQYLARQAEEMEIEFKnLQMVYANSLGEMNPKlpfMLn 190
               ....799********9988766542258777776665355669********999999999999***************8467779999*999876333454 PP

      GRAS 195 ....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                   r + +Ea+++  + +l +ll+e+++le      Lk + +++P+vv ++e +a+hn+++F++r+ +++ yy    d +           +  E+++ +
  OMO86726 191 llgrRAEDDEAVVIFYSSKLNKLLAEEGALER----ELKRLAQINPDVVFITEPNANHNHSNFVQRLEDSFPYYFH--DRVLLF--------TDEEEKICR 277
               44444444**********************99....9*************************************64..554333........334566677 PP

      GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFk 325
                ei n+v ceg++r++rh t+++Wr+ + +a F 
  OMO86726 278 GEIGNIVGCEGKNRVARHLTFHQWRSLFLSAAFM 311
               7***************************999885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MDFHYFKKLL LDCGRALEDG NLELLNALLE RIFTLAAKYN RGRMVKYYAE GIVRRAYELH  60
PSLPYFYSLL PFYYYFYYYS SPLNKIKPNV LNGKKQKQVH LIDFYLPHLY HRNRGYLFDG  120
MRKLVCGDTT VCVRVSVVLP PFLKGIVDVG REEQYLARQA EEMEIEFKNL QMVYANSLGE  180
MNPKLPFMLN LLGRRAEDDE AVVIFYSSKL NKLLAEEGAL ERELKRLAQI NPDVVFITEP  240
NANHNHSNFV QRLEDSFPYY FHDRVLLFTD EEEKICRGEI GNIVGCEGKN RVARHLTFHQ  300
WRSLFLSAAF MIPIPLQSIY HKEEENGCLV SGDRFQSAWK FNSVDHFDPS SFNSRLRGTH  360
FFSSFLLGDV FVQYCLFFYP CFNKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-19GRAS family protein