PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO86724 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 365aa MW: 42681 Da PI: 7.5424 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 85 | 1.3e-26 | 10 | 334 | 2 | 345 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf..shltaNq 100 ++lLlecA a+++g+lel++alL+r+ +la ++ + R+++y++eAL +r ++ l+ps l +f+ + P++ + l+ N OMO86724 10 KKLLLECAGAFEDGNLELVDALLERIWTLAPKSYR--GRVVKYYAEALVRRAYG--------LHPS-------------LAYFYSLLPCYFLydESLLYNY 87 589**************************987765..6***************9........3333.............3469999998877334688999 PP GRAS 101 aIlea.vege..ervHiiDfdisqGlQWp..aLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe.fnvlvakrledlele. 192 I ++g+ ++vH iDf + + + L++ + + + + +R+ +v +p + + + ++ La+ Aee++++f+ ++++a++l +++++ OMO86724 88 EIKAKvFKGKkqKQVHLIDFYLPHLYHRNrgYLFDGMRKLVcgDTTVCVRVSVVLPPFLKGIVDVGREEQYLARQAEEMEIEFKnLQMVYANSLGEMNPKl 188 99755156656699******9988766542258777776665355669********999999999999***************8467779999*9998763 PP GRAS 193 ..eLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +L++ +Eal++ + +l +ll+e+++le Lk + +++P+vv ++e +a+hn+++F +r+ +++ +y +++++ OMO86724 189 pfMLNLLGrraeddDEALVIFYSSKLNKLLAEEGALER----ELKRLAQINPDVVFITEPNANHNQSNFIQRLDHSFPFYFPRWSCFDEQ----------- 274 33453322334567**********************99....9*************************************9999999888........... PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFk.pvplsekaakqaklllrkvk 345 Er + ei n+v ce ++r+ rh +le+Wr+ + +aGF p+pl+++ +kq k l + OMO86724 275 ERI-RRGEIGNIVGCESKDRVVRHLSLEQWRSLFLSAGFMiPIPLQSQYYKQEKGCLVDYR 334 333.5679*******************************769**********999888776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 365 aa Download sequence |
MDDFDGSKSK KLLLECAGAF EDGNLELVDA LLERIWTLAP KSYRGRVVKY YAEALVRRAY 60 GLHPSLAYFY SLLPCYFLYD ESLLYNYEIK AKVFKGKKQK QVHLIDFYLP HLYHRNRGYL 120 FDGMRKLVCG DTTVCVRVSV VLPPFLKGIV DVGREEQYLA RQAEEMEIEF KNLQMVYANS 180 LGEMNPKLPF MLNLLGRRAE DDDEALVIFY SSKLNKLLAE EGALERELKR LAQINPDVVF 240 ITEPNANHNQ SNFIQRLDHS FPFYFPRWSC FDEQERIRRG EIGNIVGCES KDRVVRHLSL 300 EQWRSLFLSA GFMIPIPLQS QYYKQEKGCL VDYRDHFHSA WKFNPVDHFN PTSFNSLLRV 360 NYATQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17490.1 | 2e-21 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO86724 |