PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86419
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 590aa    MW: 65864.1 Da    PI: 6.7152
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86419genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix971.7e-3056140187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++qe+laL+++r++m+  +r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++   + +t+++fdqlea
  OMO86419  56 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTSK--ADGKTYRFFDQLEA 140
               8********************************************************************96..66678*******85 PP
2trihelix106.91.4e-33413498187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k ev aLi++r++++ +++++  k+plWee+s++mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  OMO86419 413 RWPKAEVEALIKLRTNLDVKYQDNGPKAPLWEEISSAMRKIGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 498
               8*********************************************************************8.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    
MVESSADIIV SAAPPAGIIH HEGGSSSEIG MAAATNSGEE DKGRVDEGDR SFGGNRWPRQ  60
ETLALLKIRS DMDAVFRDSS LKGPLWEEVS RKLAELGYHR SAKKCKEKFE NVYKYHKRTK  120
DGRTSKADGK TYRFFDQLEA LENLHSLQSL SPPKPQTPTP TSAAPTMPWA NNPPSSAATN  180
IHHHVQSSNP TNNVPPQTTN AINPTNISTQ AVPLHSISPF SNIPSHNSFQ NISSNLFSTS  240
TSSSTASDDD SDHQYGNSNG KKRKWKEFFR RLTKEVIQKQ EELQNKFLQT IERCEQERTA  300
REDSWRIQEM ARINREHEIL VQERSTAAAK DAAVIAFLQK VSGIQVQQPI TTVQFQVQPQ  360
EVPQPPPPQA PPSTVAAPVS LPVPSQALSF DSPMKMSNGT GGNKNAALAS PSRWPKAEVE  420
ALIKLRTNLD VKYQDNGPKA PLWEEISSAM RKIGYNRSAK RCKEKWENIN KYFKKVKESN  480
KKRPEDSKTC PYFHQLDAIY KERSSSTTKN DNNNNSSLGS SSTTMQQQQV PLMVRPEQQW  540
PPQQADEMME EGADRENVDE EDIGDSEEED YEGNDFELVA NKTAPMGTAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-147Trihelix family protein