PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86276

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 321aa MW: 36435.7 Da PI: 4.7707

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86276	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.7	9.3e-09	251	284	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ OMO86276 251 WPYPTEEEKLKLSEITGLDQKQINNWFINQRKRH 284 58*****************************885 PP
2	ELK	36.8	8.3e-13	204	225	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K +L++KYsgyL+sL++EF+ OMO86276 204 DIKGMLMQKYSGYLSSLRKEFL 225 58*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MEEELYRYRL DDDINVRVDN FSAAGVTNDF FSPVDYNLLQ FDHQKHDHHT DVSGSHMSHL 60 LKTQIASHPR YPNLVSAFIE CQKVGAPPEL ASLLEEIGRE NLPIRGCSEM GADPELDEFM 120 ESYCEVLHRY KEELSKPFDE ATTFLSNIES QLNNLCKLGQ LSNSLDYRSD EAAGTSEEEL 180 SGGEVETSES QESAGGGGSQ LSQDIKGMLM QKYSGYLSSL RKEFLKKRKK GKLPKDARMA 240 LLQWWNNHYR WPYPTEEEKL KLSEITGLDQ KQINNWFINQ RKRHWKPSED MKFALLEGVA 300 ANIGGPAMFL DTGLGTASDD I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	229	LRKEFLKKRK
2	226	230	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-76	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO86276