PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86212
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 563aa    MW: 63785.6 Da    PI: 8.8395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86212genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08496518527
               --SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                C++f +tG+C+yGd+Ck+ H++
  OMO86212 496 VCNRFVKTGFCHYGDNCKYFHPK 518
               5********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    
MASVGMAPTS GLRESSAAGV DKLPEEMNDM KIRDDKEMEA TVVDGNGTET GHIIVTTIGG  60
RNGQPKQTIS YMAERVVGHG SFGVVFQAKC LETGETVAIK KVLQDKRYKN RELQTMRLLD  120
HPNVVALKHC FFSTTEKDEL YLNLVLEYVP ETVHRVIKHY NKLNQRMPLI YVKLYTYQIF  180
RALSYIHRCI GVCHRDIKPQ NLLVNPHTHQ VKLCDFGSAK VLVKGEPNIS YICSRYYRAP  240
ELIFGATEYT TAIDIWSAGC VLAELLLGQP LFPGESGVDQ LVEIIKVLGT PTREEIKCMN  300
PNYTEFKFPQ IKAHPWHKIF HRRMPPEAVD LVSRLLQYSP NLRCTALDAL IHPFFDELRD  360
PNARLPNGRF LPPLFNFKSH ELKGVPVEIL AKLIPEHARK QCPFLGLQDN ARGWYEEDLE  420
IRYIQVLLGP PGWHRMYRYK PKSTEAQPKL DTPAARKRHL QGLQHLRAKA QWFHSLNLNL  480
NADANAHPIE PFTKGVCNRF VKTGFCHYGD NCKYFHPKND SPTAIPQSAP APGGVGMSWG  540
NLPPSLKPPP DAGYPQLPFV DWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-28C3H family protein