PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86212

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 563aa MW: 63785.6 Da PI: 8.8395

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86212	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.7e-08	496	518	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C+yGd+Ck+ H++ OMO86212 496 VCNRFVKTGFCHYGDNCKYFHPK 518 5********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MASVGMAPTS GLRESSAAGV DKLPEEMNDM KIRDDKEMEA TVVDGNGTET GHIIVTTIGG 60 RNGQPKQTIS YMAERVVGHG SFGVVFQAKC LETGETVAIK KVLQDKRYKN RELQTMRLLD 120 HPNVVALKHC FFSTTEKDEL YLNLVLEYVP ETVHRVIKHY NKLNQRMPLI YVKLYTYQIF 180 RALSYIHRCI GVCHRDIKPQ NLLVNPHTHQ VKLCDFGSAK VLVKGEPNIS YICSRYYRAP 240 ELIFGATEYT TAIDIWSAGC VLAELLLGQP LFPGESGVDQ LVEIIKVLGT PTREEIKCMN 300 PNYTEFKFPQ IKAHPWHKIF HRRMPPEAVD LVSRLLQYSP NLRCTALDAL IHPFFDELRD 360 PNARLPNGRF LPPLFNFKSH ELKGVPVEIL AKLIPEHARK QCPFLGLQDN ARGWYEEDLE 420 IRYIQVLLGP PGWHRMYRYK PKSTEAQPKL DTPAARKRHL QGLQHLRAKA QWFHSLNLNL 480 NADANAHPIE PFTKGVCNRF VKTGFCHYGD NCKYFHPKND SPTAIPQSAP APGGVGMSWG 540 NLPPSLKPPP DAGYPQLPFV DWG

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MASVGMAPTS GLRESSAAGV DKLPEEMNDM KIRDDKEMEA TVVDGNGTET GHIIVTTIGG  60
RNGQPKQTIS YMAERVVGHG SFGVVFQAKC LETGETVAIK KVLQDKRYKN RELQTMRLLD  120
HPNVVALKHC FFSTTEKDEL YLNLVLEYVP ETVHRVIKHY NKLNQRMPLI YVKLYTYQIF  180
RALSYIHRCI GVCHRDIKPQ NLLVNPHTHQ VKLCDFGSAK VLVKGEPNIS YICSRYYRAP  240
ELIFGATEYT TAIDIWSAGC VLAELLLGQP LFPGESGVDQ LVEIIKVLGT PTREEIKCMN  300
PNYTEFKFPQ IKAHPWHKIF HRRMPPEAVD LVSRLLQYSP NLRCTALDAL IHPFFDELRD  360
PNARLPNGRF LPPLFNFKSH ELKGVPVEIL AKLIPEHARK QCPFLGLQDN ARGWYEEDLE  420
IRYIQVLLGP PGWHRMYRYK PKSTEAQPKL DTPAARKRHL QGLQHLRAKA QWFHSLNLNL  480
NADANAHPIE PFTKGVCNRF VKTGFCHYGD NCKYFHPKND SPTAIPQSAP APGGVGMSWG  540
NLPPSLKPPP DAGYPQLPFV DWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	3e-28	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO86212