PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86021

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 1425aa MW: 163647 Da PI: 6.911

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86021	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.8e-24	74	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfY++YA+ +GF+vrk+ ++sk +g++++r+f+Csk+g+r++++++ ++ +++r+ trtgC a++ +++ dgk++v+++e +HnH+ OMO86021 74 KFYDKYARLLGFRVRKDWVNRSKVHGQVVSRKFTCSKQGYRRKDHRD-VNVKKHRKATRTGCLAHMIITRLPDGKYRVSHFEANHNHD 160 6******************************************99.999**********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1425 aa Download sequence
MNRDEGDLGS AGDEDPERAQ TSDQLDLNVE QNCHSPKVSH VNATQSSVPL QEETNADGVL 60 GVGIVFESDE HAYKFYDKYA RLLGFRVRKD WVNRSKVHGQ VVSRKFTCSK QGYRRKDHRD 120 VNVKKHRKAT RTGCLAHMII TRLPDGKYRV SHFEANHNHD NINPNNEQTL QLQKDLISAH 180 ASETDQPNNS ETQNPSFGLM NRRSLVRESL DCFALDYDNH LRSERVRDMK EGEAGRLLHY 240 FQRQHFENPS FFYAIQLDID DKVTNIFWAD DNMILDYTFF GDVVCLDTSC RTNKEYMPFV 300 QFLGVNHHNK VIIFAAALLY DDTVESLKWL FHTFLEAMSG KKPKVILTDQ DATVVEAINS 360 VLSETSHCVC VWQMHQKALK HLGHVLEDSS AFDNDFRSCI YDHEDEDSFI HAWEAMLVKY 420 NLKQNEWLRW MYREREKWAV VYGRNTYFID MKHSHLGESL SNELRVYLNS DQDVLQFFKH 480 FERVVDEQRY KEFEASAEMS HCKPQLMANV ILLKHASEIY TPKAFEVFQH EYEKSLNVVA 540 DQCSQNGYLY KVKTFGQNKE YNVTFDPSND TVICSCMKFE YVGFLCSHAL RVLDLRNIKV 600 VPSRYILRRW TKDARIECAE TDSDFVIKEN SLLVAARRYK EMCRSMLNIS ARAAESDEAF 660 QFASSQLTEV MKGVEKILTL KAEEAQVVTS SCSTANASNS ENEEIFLDGN AIVGQDESRA 720 QSKDENEVVV PHRRKLKNEQ ERGSKTKRIW NEKSNSPKTA TRISSPPPAY VSPQSSGPAP 780 VMQGSFNFEV NQAVQCIYQQ ANMVLDQQPS AEMYQQSNFY TDQHVSPSQT QLVQGMELDA 840 QPPHSSSCLF YDHRYRTSDT PFLGPKSETL LGLDYKMALF SLSFPVSSIT IMEFPIWTKS 900 AVGKSDLESG INSKFNPIYA AVSVLISCQV KKMNLFLPCA RVETEMWCSL PCISIFLAIA 960 LWIYKWRNPK CDGKLPPGSM GLPFVGESFH FFAPYTSSDV SPFIKTRMER YGSLFRTSLV 1020 GRKIVVSTDP DVNRFIFQQE GKLVQSWYMD SFDDIVGKDN VLSSHGFLHK YLRNLVLNLF 1080 GSENLKERLL SEIEELTSKH MQFWSCQNEV ELKQAMSTMI YDYSVKKLFG CDESKFAEKL 1140 RDCYSAFLDG LISFPLNIPG TAYWKCLQGR NKAMKVLKSM LKERRKSPKR QQEDFLDMIV 1200 EEMNKAETIL SEQTALDLLF ALPFAAFESA SSAIVLSLQY LQNNPLALAE LTQEHEAILR 1260 DREMKDSGIT WKEYKSMTFT HMVINETIRL GNIVPAIFRK VVKDVEIKGY TIPAGWIILA 1320 CTPAVHLNPN KYEDPLTFNP WRWKGRELNA GSKFFMGFGS GARLCAGAEF VKLQMSIFLH 1380 HLVTKYRWKV IKEGVALRQP GLVFPEGFHI EILKKNAHEN VAAWR

Sequence ? help Back to Top

Protein Sequence Length: 1425 aa Download sequence

MNRDEGDLGS AGDEDPERAQ TSDQLDLNVE QNCHSPKVSH VNATQSSVPL QEETNADGVL  60
GVGIVFESDE HAYKFYDKYA RLLGFRVRKD WVNRSKVHGQ VVSRKFTCSK QGYRRKDHRD  120
VNVKKHRKAT RTGCLAHMII TRLPDGKYRV SHFEANHNHD NINPNNEQTL QLQKDLISAH  180
ASETDQPNNS ETQNPSFGLM NRRSLVRESL DCFALDYDNH LRSERVRDMK EGEAGRLLHY  240
FQRQHFENPS FFYAIQLDID DKVTNIFWAD DNMILDYTFF GDVVCLDTSC RTNKEYMPFV  300
QFLGVNHHNK VIIFAAALLY DDTVESLKWL FHTFLEAMSG KKPKVILTDQ DATVVEAINS  360
VLSETSHCVC VWQMHQKALK HLGHVLEDSS AFDNDFRSCI YDHEDEDSFI HAWEAMLVKY  420
NLKQNEWLRW MYREREKWAV VYGRNTYFID MKHSHLGESL SNELRVYLNS DQDVLQFFKH  480
FERVVDEQRY KEFEASAEMS HCKPQLMANV ILLKHASEIY TPKAFEVFQH EYEKSLNVVA  540
DQCSQNGYLY KVKTFGQNKE YNVTFDPSND TVICSCMKFE YVGFLCSHAL RVLDLRNIKV  600
VPSRYILRRW TKDARIECAE TDSDFVIKEN SLLVAARRYK EMCRSMLNIS ARAAESDEAF  660
QFASSQLTEV MKGVEKILTL KAEEAQVVTS SCSTANASNS ENEEIFLDGN AIVGQDESRA  720
QSKDENEVVV PHRRKLKNEQ ERGSKTKRIW NEKSNSPKTA TRISSPPPAY VSPQSSGPAP  780
VMQGSFNFEV NQAVQCIYQQ ANMVLDQQPS AEMYQQSNFY TDQHVSPSQT QLVQGMELDA  840
QPPHSSSCLF YDHRYRTSDT PFLGPKSETL LGLDYKMALF SLSFPVSSIT IMEFPIWTKS  900
AVGKSDLESG INSKFNPIYA AVSVLISCQV KKMNLFLPCA RVETEMWCSL PCISIFLAIA  960
LWIYKWRNPK CDGKLPPGSM GLPFVGESFH FFAPYTSSDV SPFIKTRMER YGSLFRTSLV  1020
GRKIVVSTDP DVNRFIFQQE GKLVQSWYMD SFDDIVGKDN VLSSHGFLHK YLRNLVLNLF  1080
GSENLKERLL SEIEELTSKH MQFWSCQNEV ELKQAMSTMI YDYSVKKLFG CDESKFAEKL  1140
RDCYSAFLDG LISFPLNIPG TAYWKCLQGR NKAMKVLKSM LKERRKSPKR QQEDFLDMIV  1200
EEMNKAETIL SEQTALDLLF ALPFAAFESA SSAIVLSLQY LQNNPLALAE LTQEHEAILR  1260
DREMKDSGIT WKEYKSMTFT HMVINETIRL GNIVPAIFRK VVKDVEIKGY TIPAGWIILA  1320
CTPAVHLNPN KYEDPLTFNP WRWKGRELNA GSKFFMGFGS GARLCAGAEF VKLQMSIFLH  1380
HLVTKYRWKV IKEGVALRQP GLVFPEGFHI EILKKNAHEN VAAWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO86021